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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06634 ATGTCGATCCTGGGTTCTAATATCCCTAGCGAGGTTGGCTTGAAGTTGCTTCTTTGCCCACTTGGTTCCAACATTATCCTAAAAACAGCATGCTGTTCTGTGGGAGTTATATTACCTGTTTACTCTACTTTTAAGGCGATTGAGACGAATAACAGAACTGATCAGCAAAAGATGCTTTTATACTGGGCAGCATATGGGACTTTTAGCATTGCAGAAACGTTTGCAGACAAAGTTATATCATGGGTTCCACTTTACCATCATATGAAGTTTGCGTTTCTTGTTTGGCTTCAGCTTCCCACCACTAATGGTGCTAAACTGATATACATGAGTCATATACGTCCTTTTCTTTTGAGGCATCAAGGCAACCTCGATCACATTGTGGCGTTTTTGTACAACGAAACGGGTAAATTCGTTAGCGCCCACGAAAGTGAATTTCTATTCATTAAGGCAATCGTGATGAAGATTCTGATATCAGCAAAGCATTTTGTCAACGATAGCAGTCAACCCATCCCACCGGTCCCACCACCAGAAGGAAGAGCAATCACAGACGTAAATGAACAAGCAGAGAGCATTAACTCTGATGAAGAGGATGATGGTTTTGTAACTGTTCCTGCAACCTAA 621 41.71 MSILGSNIPSEVGLKLLLCPLGSNIILKTACCSVGVILPVYSTFKAIETNNRTDQQKMLLYWAAYGTFSIAETFADKVISWVPLYHHMKFAFLVWLQLPTTNGAKLIYMSHIRPFLLRHQGNLDHIVAFLYNETGKFVSAHESEFLFIKAIVMKILISAKHFVNDSSQPIPPVPPPEGRAITDVNEQAESINSDEEDDGFVTVPAT 206
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06634 206 PANTHER HVA22-LIKE PROTEINS 35 130 IPR004345 -
Chla6g06634 206 Pfam TB2-DP1, HVA22 family 39 115 IPR004345 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06634 K17279 receptor expression-enhancing protein 5/6
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr2:59542360 Chla6g06634 Chla-Chr6:271674439 dispersed
Chla Chla-Chr2:59606919 Chla6g06634 Chla-Chr6:271674439 dispersed
Chla Chla-Chr6:271674439 Chla9g04664 Chla-Chr9:178931160 dispersed