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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06698 ATGGACAGATCTATGCTGACTGTGGGACCTGGTATGGATTTGCCAATTATGCATGATAGTGATAGGTATGAACTTGTTAGGGATATTGGGTCAGGTAACTTTGGTATTGCTAGGTTGATGAGAGATAAGCAAACCAATGAACTAGTTGCGGTTAAGTATATCGAGCGTGGCGATAAGATAGATGAGAATGTTCAAAGGGAAATTATTAATCACAGGTCATTAAGGCATCCAAATATTGTTAGATTCAAAGAGGTTATTTTAACGCCAACACATCTGGCGATTGTTATGGAATATGCATCTGGAGGGGAGTTATTTGAGCGGATATGTAATGCTGGACGGTTTCCAGAAGATGAGGCACGGTTCTTCTTTCAGCAACTCATTTCGGGCGTTAGTTACTGTCATAATATGCAAGTATGCCATCGAGACTTGAAACTGGAGAACACACTACTAGATGGCAGCCCTGCTCCTCGGCTCAAAATTTGCGATTTTGGCTACTCCAAGTCCTCTGTGCTGCATTCACAACCAAAATCTACTGTTGGAACGCCTGCCTATATTGCTCCTGAAGTCTTGCTTAAGAAAGAATACGATGGCAAGATTGCAGATGTATGGTCTTGTGGTGTAACATTATATGTAATGCTTGTGGGAGCTTACCCTTTTGAGGATCCGGAAGAGCCTAAGAATTTTCGCAAGACCATACAGCGAATTCTGAATGTCCAGTACTCAATTCCATCCTATGTTCATATATCCCCCGAGTGCCGCCACTTGATCTCCAGAATATTTGTTGCAGATCCTGCTAAGCGGATAACCATGGACGAGATAAAAAACCACGAATGGTTTATAAAAAACCTACCAGCAGATCTCACAAAAGACGATGCAATGGACCAATTTGGTGGCCCCGATCAGCCTACTCAGACTGTCGATGAAATCATGCAGATAATCGCTGAAGCAACCATCCCTCCTGTTGGCGCCAATAATCTGAACCAGTATCTTACTGGTAGTCTGGATATGGATGATGACATGGATGAGGATCTTTTGAGTGATTGCGACCTTGATATTGATAGCAGTGGGGAGATTGTATACGCTATGTGA 1089 42.79 MDRSMLTVGPGMDLPIMHDSDRYELVRDIGSGNFGIARLMRDKQTNELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFPEDEARFFFQQLISGVSYCHNMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIQRILNVQYSIPSYVHISPECRHLISRIFVADPAKRITMDEIKNHEWFIKNLPADLTKDDAMDQFGGPDQPTQTVDEIMQIIAEATIPPVGANNLNQYLTGSLDMDDDMDEDLLSDCDLDIDSSGEIVYAM 362
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06698 362 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chla6g06698 362 CDD STKc-SnRK2-3 22 278 - -
Chla6g06698 362 FunFam Serine-threonine-protein kinase SRK2E 99 287 - -
Chla6g06698 362 SMART serkin-6 23 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chla6g06698 362 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Chla6g06698 362 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chla6g06698 362 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524(InterPro)
Chla6g06698 362 SUPERFAMILY Protein kinase-like (PK-like) 15 289 IPR011009 -
Chla6g06698 362 Gene3D Transferase(Phosphotransferase) domain 1 99 287 - -
Chla6g06698 362 ProSitePatterns Serine-Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Chla6g06698 362 PANTHER MAP-MICROTUBULE AFFINITY-REGULATING KINASE 21 285 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Chla6g06698 362 FunFam Serine-threonine-protein kinase SRK2E 14 98 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06698 K14498 serine/threonine-protein kinase SRK2 [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr3:262632189 Chla6g06698 Chla-Chr6:273467018 dispersed
Chla Chla-Chr5:11693455 Chla6g06698 Chla-Chr6:273467018 dispersed
Chla Chla-Chr5:96036453 Chla6g06698 Chla-Chr6:273467018 dispersed
Chla Chla-Chr6:273467018 Chla9g00845 Chla-Chr9:19967360 dispersed
Chla Chla-Chr2:60611923 Chla6g06698 Chla-Chr6:273467018 transposed
Chla Chla-Chr6:201309880 Chla6g06698 Chla-Chr6:273467018 transposed
Chla Chla-Chr7:158072241 Chla6g06698 Chla-Chr6:273467018 transposed
Chla Chla-Chr7:158457319 Chla6g06698 Chla-Chr6:273467018 transposed
Chla Chla-Chr2:60200021 Chla6g06698 Chla-Chr6:273467018 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chla2g06306 . 38 468 CBL-interacting serine-threonine protein kinases family AT5G25110 60.948 0.0 558.0
Chla5g06483 ACH 10 278 CBL-interacting serine-threonine protein kinases family AT2G30360 28.623 8.71e-39 141.0
Chla3g01155 ACH 17 237 CBL-interacting serine-threonine protein kinases family AT5G35410 35.371 3.87e-40 145.0
Chla1g02762 . 3 256 CBL-interacting serine-threonine protein kinases family AT5G10930 44.141 3.27e-52 172.0
Chla3g07184 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G10930 63.393 0.0 579.0
Chla6g00885 . 15 455 CBL-interacting serine-threonine protein kinases family AT4G18700 70.246 0.0 639.0
Chla7g03582 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 39.739 1.11e-66 215.0
Chla1g02763 . 3 436 CBL-interacting serine-threonine protein kinases family AT5G10930 53.139 2.78e-168 477.0
Chla3g04488 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 41.754 1.26e-68 218.0
Chla4g02798 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 60.563 0.0 530.0
Chla3g04464 . 68 271 CBL-interacting serine-threonine protein kinases family AT5G10930 47.465 3.52e-59 194.0
Chla1g03736 . 1 432 CBL-interacting serine-threonine protein kinases family AT2G30360 57.306 2.85e-174 494.0
Chla5g01572 . 18 125 CBL-interacting serine-threonine protein kinases family AT1G01140 45.872 1.01e-25 98.6
Chla6g03335 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 37.455 5.52e-54 181.0
Chla2g00547 . 146 209 CBL-interacting serine-threonine protein kinases family AT5G45810 50.0 1.65e-11 62.8
Chla5g03555 . 28 285 CBL-interacting serine-threonine protein kinases family AT1G30270 37.308 1.42e-58 192.0
Chla1g00886 . 34 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.341 2.42e-46 159.0
Chla5g00349 . 189 282 CBL-interacting serine-threonine protein kinases family AT2G25090 39.0 1.07e-15 72.4
Chla3g05710 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G10930 63.17 0.0 578.0
Chla6g05125 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.912 9.78e-67 214.0
Chla6g01425 . 17 223 CBL-interacting serine-threonine protein kinases family AT5G35410 34.419 2.31e-34 127.0
Chla9g04098 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 2.08e-92 285.0
Chla5g00347 . 8 265 CBL-interacting serine-threonine protein kinases family AT4G24400 43.494 1.80e-66 214.0
Chla1g00905 . 15 279 CBL-interacting serine-threonine protein kinases family AT5G10930 34.572 1.61e-49 167.0
Chla3g04491 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 37.542 1.89e-59 196.0
Chla8g02931 . 10 76 CBL-interacting serine-threonine protein kinases family AT5G01810 40.299 5.57e-10 52.8
Chla2g01887 . 43 275 CBL-interacting serine-threonine protein kinases family AT5G10930 45.528 2.87e-60 198.0
Chla6g00884 . 210 421 CBL-interacting serine-threonine protein kinases family AT5G45820 43.621 2.60e-62 199.0
Chla4g04898 . 2 447 CBL-interacting serine-threonine protein kinases family AT1G01140 73.094 0.0 697.0
Chla3g02489 . 8 289 CBL-interacting serine-threonine protein kinases family AT4G24400 41.156 2.02e-66 214.0
Chla9g00705 . 30 326 CBL-interacting serine-threonine protein kinases family AT1G30270 38.602 1.32e-60 200.0
Chla5g02648 . 8 265 CBL-interacting serine-threonine protein kinases family AT4G24400 45.353 2.64e-70 223.0
Chla4g03411 . 16 342 CBL-interacting serine-threonine protein kinases family AT2G26980 36.416 1.24e-65 213.0
Chla2g05502 . 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.484 3.61e-53 177.0
Chla1g05495 . 16 438 CBL-interacting serine-threonine protein kinases family AT4G30960 75.059 0.0 628.0
Chla4g02202 . 4 362 CBL-interacting serine-threonine protein kinases family AT2G26980 33.787 8.38e-57 190.0
Chla4g03116 . 11 265 CBL-interacting serine-threonine protein kinases family AT5G35410 39.062 3.17e-53 181.0
Chla2g05478 . 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.714 9.93e-56 184.0
Chla1g05922 . 18 68 CBL-interacting serine-threonine protein kinases family AT1G01140 43.137 2.11e-07 47.0
Chla8g05475 . 28 461 CBL-interacting serine-threonine protein kinases family AT1G30270 71.034 0.0 645.0
Chla8g02693 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.362 3.71e-92 284.0
Chla4g03385 . 6 265 CBL-interacting serine-threonine protein kinases family AT4G24400 50.385 6.82e-87 272.0
Chla5g02646 . 19 324 CBL-interacting serine-threonine protein kinases family AT1G01140 37.838 6.91e-59 194.0
Chla3g05043 . 102 258 CBL-interacting serine-threonine protein kinases family AT5G57630 26.455 3.87e-07 51.2
Chla3g04735 . 130 202 CBL-interacting serine-threonine protein kinases family AT5G57630 50.0 3.18e-19 84.0
Chla9g00845 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 43.509 2.64e-70 224.0
Chla4g02799 . 1 451 CBL-interacting serine-threonine protein kinases family AT5G58380 66.593 0.0 621.0
Chla6g00093 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 58.444 3.57e-178 503.0
Chla7g02261 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 41.41 1.01e-103 311.0
Chla7g03572 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 39.414 1.48e-66 215.0
Chla8g02698 . 42 231 CBL-interacting serine-threonine protein kinases family AT2G26980 45.361 5.46e-50 166.0
Chla9g01542 . 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.0 3.15e-55 183.0
Chla5g04456 . 1 417 CBL-interacting serine-threonine protein kinases family AT5G01810 56.532 9.56e-174 490.0
Chla6g01041 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 84.651 0.0 769.0
Chla6g06698 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 41.042 4.12e-68 219.0
Chla2g01905 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 42.279 6.07e-67 214.0
Chla5g02259 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 51.575 4.11e-92 286.0
Chla2g06308 . 38 465 CBL-interacting serine-threonine protein kinases family AT5G25110 60.271 0.0 546.0
Chla1g02766 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 43.015 4.55e-68 217.0
Chla8g00001 . 2 425 CBL-interacting serine-threonine protein kinases family AT5G45820 63.532 0.0 558.0
Chla6g03342 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 37.091 3.06e-51 182.0
Chla5g03392 . 299 334 CBL-interacting serine-threonine protein kinases family AT2G26980 63.889 1.83e-08 52.4
Chla3g01838 . 68 143 CBL-interacting serine-threonine protein kinases family AT5G35410 47.436 1.35e-17 75.5
Chla7g05843 . 31 468 CBL-interacting serine-threonine protein kinases family AT5G25110 69.545 0.0 643.0
Chla1g01880 . 18 439 CBL-interacting serine-threonine protein kinases family AT4G30960 70.283 0.0 589.0
Chla5g06473 . 5 278 CBL-interacting serine-threonine protein kinases family AT2G30360 30.249 3.10e-45 160.0
Chla4g03528 . 1 445 CBL-interacting serine-threonine protein kinases family AT4G24400 79.642 0.0 752.0
Chla5g02848 . 1 444 CBL-interacting serine-threonine protein kinases family AT3G17510 65.541 0.0 589.0
Chla6g00130 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 54.967 2.16e-163 466.0
Chla7g05844 . 48 468 CBL-interacting serine-threonine protein kinases family AT5G25110 69.976 0.0 620.0
Chla4g05565 . 246 320 CBL-interacting serine-threonine protein kinases family AT1G30270 60.526 6.03e-25 97.4
Chla6g04341 . 18 441 CBL-interacting serine-threonine protein kinases family AT4G30960 73.488 0.0 615.0
Chla7g03785 . 109 204 CBL-interacting serine-threonine protein kinases family AT5G10930 41.905 2.63e-08 51.2
Chla3g00508 . 244 326 CBL-interacting serine-threonine protein kinases family AT1G30270 33.333 4.94e-06 44.3
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chla Pkinase 3e-74 CL0016 PK CAMK_OST1L