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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06703 ATGGGTAGCTTTAATCTATCTCATGAGCTAAACTTTGATTACAAACCATCTTTCTTGCCCAAAACAATCACTAGCTTTCTTGAAGAAGTGTCGAAATTCGGTAATGTGACCGAGAAGGTACTAAAACTTGATGATTTTGTTAACCGAACTCCTCTATGCATGCTCCTCATCAATGATGCAATTGTTGCATTAAAAGAGGAATCAAATGTGTTAAAGAAGTCGTTGCATGTTGATGATCAGCCAGTACTTGAAGAATTTATACCTCTCAAGAATAGTTGTGATGATGATGCAAAAGTAGAAATTGTTGCAAATGAAAATGATAATGGTGATAAGAAGAATTGGTTGAGGTCTACACATCTTTGGAACAGTAATGAGAGCCTTGAGACAGTAGATGAAAAAGAGGAAAGGAGAGCGGTTTTTAGCCCCGAAATCAAGAATCTAATGAAGGGAAATGGTTTGCTTACTGAAATCAATGGTGATAGTAAATTGATTCAATGTTCTATGCCAAATGTGCAAACAAACGCGCGAATTGGTGGGATTGTCCCCTTGCCATCACAACAACAGACATCTAGGAAGCAAAGGAGATGTTGGTCAACCGAGCTGCATAGACGATTTGTCAATGCGTTGGAAGAACTTGGAGGATCACAAGTAGCCACGCCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGTCTCACCAATGACGAAGTGAAAAGCCATTTACAAAAATATAGACTTCATACGCCAAGATCTTCAAGTACAAATCAATCTAGTCTCGCTGTGGGAGGAGGATTATGTATGTCCAAAGGCGGCAATTCTCAATCAGGGTCTCCGGATGGGCCTCTCACGAACGGTGAAAACAACATGGATGACTTAAGAAGAAGAGAACCAAAATTATTGTTGGAATCCTTAATCTTTAACCAATTTTAG 930 39.35 MGSFNLSHELNFDYKPSFLPKTITSFLEEVSKFGNVTEKVLKLDDFVNRTPLCMLLINDAIVALKEESNVLKKSLHVDDQPVLEEFIPLKNSCDDDAKVEIVANENDNGDKKNWLRSTHLWNSNESLETVDEKEERRAVFSPEIKNLMKGNGLLTEINGDSKLIQCSMPNVQTNARIGGIVPLPSQQQTSRKQRRCWSTELHRRFVNALEELGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTPRSSSTNQSSLAVGGGLCMSKGGNSQSGSPDGPLTNGENNMDDLRRREPKLLLESLIFNQF 309
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06703 309 MobiDBLite consensus disorder prediction 245 290 - -
Chla6g06703 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 38 283 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Chla6g06703 309 Pfam Myb-like DNA-binding domain 194 245 IPR001005 -
Chla6g06703 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 249 IPR017930 -
Chla6g06703 309 SUPERFAMILY Homeodomain-like 189 248 IPR009057 -
Chla6g06703 309 Gene3D - 191 248 - -
Chla6g06703 309 FunFam Myb family transcription factor 191 249 - -
Chla6g06703 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 247 IPR006447 GO:0003677(InterPro)
Chla6g06703 309 MobiDBLite consensus disorder prediction 246 284 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06703 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
41600 Chla1g02288 Chla6g06703
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr4:258289171 Chla6g06703 Chla-Chr6:273758845 dispersed
Chla Chla-Chr6:273758845 Chla7g05215 Chla-Chr7:235321944 dispersed
Chla Chla-Chr1:88820136 Chla6g06703 Chla-Chr6:273758845 wgd
Chla Chla-Chr2:60571555 Chla6g06703 Chla-Chr6:273758845 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chla1g04121 . 1 374 G2-like Transcription Factor family AT4G28610 48.13 1.30e-96 294.0
Chla1g03595 . 46 174 G2-like Transcription Factor family AT2G40260 55.0 6.68e-36 132.0
Chla2g00161 . 14 189 G2-like Transcription Factor family AT3G12730 63.636 2.97e-73 223.0
Chla3g05488 . 196 388 G2-like Transcription Factor family AT1G32240 62.687 1.26e-66 212.0
Chla4g03849 . 5 179 G2-like Transcription Factor family AT2G01060 83.152 2.69e-100 291.0
Chla9g00128 . 176 387 G2-like Transcription Factor family AT1G32240 62.162 4.27e-70 223.0
Chla3g01604 ACH 3 387 G2-like Transcription Factor family AT3G04030 54.962 4.81e-121 353.0
Chla8g05012 ACH 18 401 G2-like Transcription Factor family AT5G18240 48.579 5.09e-106 314.0
Chla1g03463 . 1 96 G2-like Transcription Factor family AT3G46640 48.571 4.91e-19 80.9
Chla5g07498 . 1 199 G2-like Transcription Factor family AT3G24120 78.607 1.17e-112 323.0
Chla9g00058 . 1 182 G2-like Transcription Factor family AT5G45580 63.298 4.47e-73 221.0
Chla1g02288 ACH 6 317 G2-like Transcription Factor family AT2G03500 37.725 1.11e-57 192.0
Chla6g00208 . 73 140 G2-like Transcription Factor family AT2G40260 66.176 1.32e-28 110.0
Chla7g00108 . 197 265 G2-like Transcription Factor family AT1G25550 39.13 1.16e-10 60.1
Chla7g04610 . 2 228 G2-like Transcription Factor family AT5G42630 45.263 5.93e-52 171.0
Chla1g03275 . 172 324 G2-like Transcription Factor family AT5G06800 65.806 5.46e-65 209.0
Chla1g03450 . 1 204 G2-like Transcription Factor family AT3G46640 50.0 1.15e-58 187.0
Chla2g01904 ACH 4 301 G2-like Transcription Factor family AT2G03500 38.462 8.28e-49 167.0
Chla2g05000 . 192 386 G2-like Transcription Factor family AT1G32240 57.416 2.72e-60 197.0
Chla5g03737 . 1 79 G2-like Transcription Factor family AT1G14600 70.886 1.02e-32 119.0
Chla3g05497 . 196 388 G2-like Transcription Factor family AT1G32240 62.687 5.63e-66 211.0
Chla5g00975 ACH 6 197 G2-like Transcription Factor family AT3G12730 53.234 8.37e-67 206.0
Chla6g00264 . 73 140 G2-like Transcription Factor family AT2G40260 66.176 3.32e-29 111.0
Chla26832g00001 . 15 178 G2-like Transcription Factor family AT2G01060 50.61 1.08e-50 166.0
Chla6g06703 ACH 27 270 G2-like Transcription Factor family AT1G25550 38.976 1.54e-44 153.0
Chla4g05615 . 2 311 G2-like Transcription Factor family AT1G25550 50.575 6.14e-99 296.0
Chla8g01018 . 44 172 G2-like Transcription Factor family AT2G40260 61.24 4.01e-44 155.0
Chla1g05992 . 1 432 G2-like Transcription Factor family AT2G03500 47.314 2.20e-123 364.0
Chla8g01015 . 49 172 G2-like Transcription Factor family AT2G40260 62.903 3.89e-44 155.0
Chla7g00995 . 40 341 G2-like Transcription Factor family AT5G29000 46.44 4.84e-74 233.0
Chla6g03599 . 130 224 G2-like Transcription Factor family AT3G46640 72.917 1.17e-43 144.0
Chla4g06878 . 7 174 G2-like Transcription Factor family AT2G01060 49.704 7.32e-53 171.0
Chla4g03087 . 1 312 G2-like Transcription Factor family AT3G46640 47.536 1.07e-78 241.0
Chla6g00016 . 9 222 G2-like Transcription Factor family AT2G01060 70.698 1.04e-96 283.0
Chla5g07473 . 16 286 G2-like Transcription Factor family AT4G13640 68.0 6.69e-126 358.0
Chla6g06323 . 73 138 G2-like Transcription Factor family AT2G40260 66.667 2.21e-28 110.0
Chla3g00705 . 1 270 G2-like Transcription Factor family AT4G13640 61.481 6.40e-112 323.0
Chla9g04672 . 98 403 G2-like Transcription Factor family AT5G16560 42.857 3.10e-64 206.0
Chla9g00242 . 36 417 G2-like Transcription Factor family AT2G20570 47.015 1.53e-87 270.0
Chla6g06126 . 168 324 G2-like Transcription Factor family AT5G06800 59.877 5.18e-56 184.0
Chla9g00217 . 36 417 G2-like Transcription Factor family AT2G20570 46.599 1.45e-87 270.0
Chla6g03601 . 23 335 G2-like Transcription Factor family AT3G10760 48.148 3.59e-67 211.0
Chla6g06100 . 168 324 G2-like Transcription Factor family AT5G06800 59.146 6.77e-56 184.0
Chla4g01539 . 22 290 G2-like Transcription Factor family AT1G69580 51.481 1.90e-73 228.0
Chla4g02377 . 56 376 G2-like Transcription Factor family AT4G28610 51.327 1.50e-94 287.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chla Myb_DNA-binding 5.3e-07 CL0123 TF GARP-G2-like