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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06725 ATGTCTTTGATGAACACACAACTAGTAATTCAAATAACCATAATTGCCGCAATATTGGCAGTTGGATCAAGTAATCCGAACGTCCAACAGGGTCCCCAAAATTGGAACTTTGGGTTCAACTATACCAATGAGCCCTTTAGACACCCGAATCCTTTTCAGAATTCTAGAAGAGTCATTGTTGGTGGTTCTGATAATTGGCTTTTTAAATTTGATCCGCCAAGTGATACCAACATACATCCACATAGCATTTATTTGCTACCAAATCTATGGAGCTTTTTGAGGTGTGATTTAAGATGGGCAAAGCGTGTAGCAAACACGTCTCAAGGTGCAGGAGAAGGGTTTGAATTCGTGCTTAACAAATGGAAGCCATATTACTTTGCTTGTGGAGAAAGCAACGGTTTTCATTGCCAATCTGGAATGAAATTTTTTGTGATGCCATCGTTTCGTTGGCAATAA 456 39.47 MSLMNTQLVIQITIIAAILAVGSSNPNVQQGPQNWNFGFNYTNEPFRHPNPFQNSRRVIVGGSDNWLFKFDPPSDTNIHPHSIYLLPNLWSFLRCDLRWAKRVANTSQGAGEGFEFVLNKWKPYYFACGESNGFHCQSGMKFFVMPSFRWQ 151
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06725 151 Gene3D - 28 147 IPR008972 -
Chla6g06725 151 PANTHER GLYCINE-RICH PROTEIN-LIKE 31 150 - -
Chla6g06725 151 SUPERFAMILY Cupredoxins 56 146 IPR008972 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06725 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:274365160 Chla6g06727 Chla-Chr6:274395050 dispersed
Chla Chla-Chr6:274365160 Chla6g06726 Chla-Chr6:274380090 tandem