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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06838 ATGTATTTTTCAAATTGTGACCCAGAGACAGCTGCTGCAGCTCAACCTCCTGATTCCCAAGCCAAGTCTGCTGCTATCGAGCGAGCCAATGAGGTTCAAGCAAGCCTCCCATCTGAGTTACCTAGCTTTGTTAAGGCTATGCTACCATCACATGTTGCTGGTGGCTTTTGGCGGGGTCTTACCAAGCAATTCTGTGATGCAAATCTGCCAAAGCATGATGAAACAATTTTATTGGTGGATGAAGATGGTAAAGAATTCAACACTAAGTTTCTCGTTGGCAAAATTGGATTGAGTGGTGGTTGGAGAGGGTTCTCAATTGCTCACAAATTACTCGAGGGAGATGTCTACATTGTAAGGGTACATGGTCTAAATGAAATTGATGGAGCTCTTGGCCTTCTTAACTTAGTTCCGAGCGGAATGAATGTCATGAATGTTTACCAACGTAAAAAGAAAAAGAACTCAGTGAATAGTCAGAAAGCCATAGATATGGATATAGATTTGCATCAAGAAAATGTTCAATATAATGGTTTAGTAGTGTATGATCAATCAGTAGATGGTCGATTTGTTTAA 570 40.53 MYFSNCDPETAAAAQPPDSQAKSAAIERANEVQASLPSELPSFVKAMLPSHVAGGFWRGLTKQFCDANLPKHDETILLVDEDGKEFNTKFLVGKIGLSGGWRGFSIAHKLLEGDVYIVRVHGLNEIDGALGLLNLVPSGMNVMNVYQRKKKKNSVNSQKAIDMDIDLHQENVQYNGLVVYDQSVDGRFV 189
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06838 189 CDD B3-DNA 41 117 IPR003340 GO:0003677(InterPro)
Chla6g06838 189 Gene3D - 19 127 IPR015300 -
Chla6g06838 189 MobiDBLite consensus disorder prediction 1 20 - -
Chla6g06838 189 ProSiteProfiles B3 DNA-binding domain profile. 43 138 IPR003340 GO:0003677(InterPro)
Chla6g06838 189 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 18 117 IPR044837 -
Chla6g06838 189 Pfam B3 DNA binding domain 43 120 IPR003340 GO:0003677(InterPro)
Chla6g06838 189 SUPERFAMILY DNA-binding pseudobarrel domain 38 122 IPR015300 -
Chla6g06838 189 SMART B3-2 43 129 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06838 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:278421692 Chla6g06838 Chla-Chr6:278754697 dispersed
Chla Chla-Chr6:278754697 Chla6g06864 Chla-Chr6:279880240 dispersed
Chla Chla-Chr6:278754697 Chla6g06843 Chla-Chr6:279073246 proximal
Chla Chla-Chr6:278754697 Chla6g06844 Chla-Chr6:279138412 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chla7g03529 . 15 167 B3 DNA Binding Superfamily AT5G66980 31.25 2.89e-20 85.9
Chla2g00692 . 321 427 B3 DNA Binding Superfamily AT4G21550 42.727 4.21e-24 99.0
Chla2g00691 . 323 426 B3 DNA Binding Superfamily AT4G21550 41.121 8.81e-23 94.7
Chla5g06533 . 62 772 B3 DNA Binding Superfamily AT5G60450 48.0 0.0 593.0
Chla7g02518 . 28 422 B3 DNA Binding Superfamily AT4G30080 59.453 2.67e-154 450.0
Chla7g03635 . 115 253 B3 DNA Binding Superfamily AT3G19184 41.727 1.25e-34 130.0
Chla5g04858 . 232 586 B3 DNA Binding Superfamily AT4G23980 43.669 2.07e-78 255.0
Chla5g01632 . 4 110 B3 DNA Binding Superfamily AT5G66980 34.259 7.67e-12 59.3
Chla2g03711 . 167 289 B3 DNA Binding Superfamily AT1G05930 34.615 3.89e-12 63.2
Chla3g05184 . 7 613 B3 DNA Binding Superfamily AT4G23980 56.358 0.0 641.0
Chla5g01909 . 53 850 B3 DNA Binding Superfamily AT5G62000 55.542 0.0 838.0
Chla2g01116 . 321 427 B3 DNA Binding Superfamily AT4G21550 42.727 3.87e-24 99.0
Chla6g00543 . 234 660 B3 DNA Binding Superfamily AT4G32010 38.991 6.32e-81 273.0
Chla4g00066 . 1 105 B3 DNA Binding Superfamily AT5G60130 31.776 7.16e-09 52.4
Chla4g05527 . 167 289 B3 DNA Binding Superfamily AT1G05930 30.534 7.30e-10 54.3
Chla2g06143 . 98 208 B3 DNA Binding Superfamily AT3G19184 55.856 2.87e-35 121.0
Chla8g03324 . 2 686 B3 DNA Binding Superfamily AT2G28350 51.117 0.0 637.0
Chla4g02468 . 171 675 B3 DNA Binding Superfamily AT3G24650 43.548 5.45e-117 365.0
Chla2g03662 . 170 317 B3 DNA Binding Superfamily AT1G05930 34.416 2.25e-16 75.1
Chla6g04738 . 317 374 B3 DNA Binding Superfamily AT4G23980 50.82 1.61e-09 53.5
Chla7g03628 . 92 163 B3 DNA Binding Superfamily AT5G42700 38.462 2.26e-11 61.2
Chla8g03358 . 62 772 B3 DNA Binding Superfamily AT5G60450 51.788 0.0 680.0
Chla6g06838 . 87 205 B3 DNA Binding Superfamily AT5G42700 48.739 1.14e-31 112.0
Chla6g06864 . 90 167 B3 DNA Binding Superfamily AT5G42700 38.272 4.59e-09 52.0
Chla3g05258 . 9 613 B3 DNA Binding Superfamily AT4G23980 58.085 0.0 677.0
Chla8g00808 . 1 209 B3 DNA Binding Superfamily AT3G19184 43.868 8.70e-37 127.0
Chla9g03255 ACH 45 193 B3 DNA Binding Superfamily AT3G26790 55.705 2.74e-51 167.0
Chla2g00690 . 273 366 B3 DNA Binding Superfamily AT4G32010 38.947 1.64e-18 77.4
Chla4g01108 . 1 293 B3 DNA Binding Superfamily AT5G60130 26.518 1.91e-11 62.8
Chla2g03720 . 167 289 B3 DNA Binding Superfamily AT1G05930 34.615 4.75e-12 62.4
Chla1g00806 . 5 488 B3 DNA Binding Superfamily AT1G19220 68.0 0.0 654.0
Chla6g06833 . 87 205 B3 DNA Binding Superfamily AT5G42700 54.622 7.01e-40 140.0
Chla4g05548 . 171 314 B3 DNA Binding Superfamily AT1G05930 31.579 6.27e-11 59.3
Chla7g00317 . 268 333 B3 DNA Binding Superfamily AT1G59750 75.758 3.26e-27 103.0
Chla1g05119 . 58 495 B3 DNA Binding Superfamily AT5G20730 65.695 0.0 558.0
Chla6g04155 . 113 260 B3 DNA Binding Superfamily AT3G19184 46.98 3.27e-36 132.0
Chla4g05554 . 164 289 B3 DNA Binding Superfamily AT1G05930 33.083 1.32e-10 58.9
Chla5g01898 . 65 850 B3 DNA Binding Superfamily AT5G62000 55.056 0.0 793.0
Chla5g01629 ACH 266 398 B3 DNA Binding Superfamily AT2G30470 42.857 5.03e-28 110.0
Chla5g05249 . 107 230 B3 DNA Binding Superfamily AT3G19184 45.161 5.61e-29 111.0
Chla2g02216 . 5 135 B3 DNA Binding Superfamily AT1G59750 54.198 6.55e-35 132.0
Chla2g03737 . 153 306 B3 DNA Binding Superfamily AT1G05930 31.056 8.55e-11 58.2
Chla2g00688 . 323 426 B3 DNA Binding Superfamily AT4G21550 41.121 7.49e-23 94.7
Chla4g06744 . 4 136 B3 DNA Binding Superfamily AT5G66980 37.313 6.84e-23 90.5
Chla6g00743 . 1 590 B3 DNA Binding Superfamily AT2G33860 49.588 0.0 532.0
Chla7g03530 ACH 23 141 B3 DNA Binding Superfamily AT4G01580 37.705 4.34e-20 84.0
Chla8g04268 . 1 794 B3 DNA Binding Superfamily AT5G37020 66.224 0.0 1020.0
Chla7g03629 . 112 243 B3 DNA Binding Superfamily AT3G19184 39.286 2.01e-22 94.0
Chla2g00689 . 315 406 B3 DNA Binding Superfamily AT4G21550 40.0 1.33e-18 77.8
Chla8g01598 . 1 668 B3 DNA Binding Superfamily AT4G30080 54.905 0.0 680.0
Chla2g03717 . 167 310 B3 DNA Binding Superfamily AT1G05930 33.113 2.37e-13 66.6
Chla2g06854 . 1 844 B3 DNA Binding Superfamily AT5G62000 59.555 0.0 957.0
Chla4g06717 . 4 136 B3 DNA Binding Superfamily AT5G66980 32.09 1.41e-15 70.1
Chla2g06128 . 1 229 B3 DNA Binding Superfamily AT3G19184 53.165 2.65e-71 218.0
Chla4g05547 . 167 289 B3 DNA Binding Superfamily AT1G05930 32.824 3.37e-13 64.7
Chla4g06492 . 7 777 B3 DNA Binding Superfamily AT4G32010 47.529 0.0 687.0
Chla6g04099 . 57 377 B3 DNA Binding Superfamily AT1G19220 70.279 1.19e-142 449.0
Chla5g06459 . 4 693 B3 DNA Binding Superfamily AT2G28350 56.259 0.0 665.0
Chla3g05257 . 159 378 B3 DNA Binding Superfamily AT3G61830 54.545 1.17e-71 228.0
Chla2g07320 . 38 148 B3 DNA Binding Superfamily AT4G34400 30.088 8.21e-09 51.6
Chla1g05124 . 1 495 B3 DNA Binding Superfamily AT5G20730 61.66 0.0 578.0
Chla1g06541 . 14 477 B3 DNA Binding Superfamily AT1G19220 78.801 0.0 738.0
Chla2g00693 ACH 31 103 B3 DNA Binding Superfamily AT4G21550 49.315 9.77e-21 88.6
Chla6g06813 . 48 205 B3 DNA Binding Superfamily AT5G42700 40.107 2.70e-40 142.0
Chla4g02750 . 4 217 B3 DNA Binding Superfamily AT5G58280 51.339 1.54e-69 216.0
Chla2g02770 . 1 668 B3 DNA Binding Superfamily AT4G30080 49.118 0.0 572.0
Chla1g03725 . 1 507 B3 DNA Binding Superfamily AT4G32010 42.5 1.09e-130 400.0
Chla6g04165 . 113 230 B3 DNA Binding Superfamily AT3G19184 55.085 5.38e-36 131.0
Chla1g04612 . 170 289 B3 DNA Binding Superfamily AT1G05930 30.894 1.08e-08 53.9
Chla2g03718 . 153 306 B3 DNA Binding Superfamily AT1G05930 30.625 3.20e-10 56.6
Chla2g02230 . 5 135 B3 DNA Binding Superfamily AT1G59750 53.435 1.30e-32 130.0
Chla2g01115 . 31 103 B3 DNA Binding Superfamily AT4G21550 50.685 1.85e-21 88.6
Chla4g05525 . 170 289 B3 DNA Binding Superfamily AT1G05930 30.952 2.50e-07 49.3
Chla1g04631 . 148 294 B3 DNA Binding Superfamily AT1G05930 31.818 1.52e-13 68.6
Chla2g01117 . 51 367 B3 DNA Binding Superfamily AT4G32010 31.269 4.23e-30 118.0
Chla1g04632 . 167 289 B3 DNA Binding Superfamily AT1G05930 31.496 7.45e-07 48.5
Chla2g05544 . 164 289 B3 DNA Binding Superfamily AT1G05930 32.308 1.44e-13 67.4
Chla2g06144 . 1 229 B3 DNA Binding Superfamily AT3G19184 53.165 6.31e-72 219.0
Chla3g06657 . 514 562 B3 DNA Binding Superfamily AT4G32010 42.308 7.90e-07 52.0
Chla4g02777 . 5 729 B3 DNA Binding Superfamily AT4G32010 47.059 0.0 668.0
Chla4g05545 . 167 289 B3 DNA Binding Superfamily AT1G05930 27.132 1.87e-08 51.6
Chla4g01176 . 2 370 B3 DNA Binding Superfamily AT4G00260 25.661 4.37e-30 120.0
Chla7g03631 . 112 230 B3 DNA Binding Superfamily AT3G19184 47.059 2.93e-32 122.0
Chla3g05183 . 3 613 B3 DNA Binding Superfamily AT4G23980 51.402 0.0 562.0
Chla4g00067 . 1 113 B3 DNA Binding Superfamily AT5G60130 29.565 7.51e-10 55.8
Chla3g06654 . 514 562 B3 DNA Binding Superfamily AT4G32010 42.308 7.69e-07 51.6
Chla8g02999 . 45 212 B3 DNA Binding Superfamily AT3G26790 40.476 1.29e-36 130.0
Chla6g01023 . 1 464 B3 DNA Binding Superfamily AT1G30330 87.607 0.0 833.0
Chla5g06507 . 62 772 B3 DNA Binding Superfamily AT5G60450 45.344 0.0 536.0
Chla26908g00005 . 51 424 B3 DNA Binding Superfamily AT1G19220 68.351 5.96e-164 506.0
Chla8g01596 . 1 668 B3 DNA Binding Superfamily AT4G30080 55.814 0.0 703.0
Chla9g02937 . 19 130 B3 DNA Binding Superfamily AT3G18960 29.825 8.77e-11 58.9
Chla7g03543 . 9 96 B3 DNA Binding Superfamily AT5G66980 40.909 1.90e-15 70.9
Chla1g05533 . 257 411 B3 DNA Binding Superfamily AT4G30080 68.987 9.12e-69 228.0
Chla2g05545 . 164 289 B3 DNA Binding Superfamily AT1G05930 32.308 8.63e-14 68.2
Chla7g03553 ACH 16 141 B3 DNA Binding Superfamily AT4G01580 37.209 3.16e-21 86.3
Chla2g03714 . 167 289 B3 DNA Binding Superfamily AT1G05930 33.846 3.07e-11 60.5
Chla4g05535 . 142 289 B3 DNA Binding Superfamily AT1G05930 29.221 1.26e-10 59.7
Chla9g03944 . 313 425 B3 DNA Binding Superfamily AT4G21550 46.957 4.95e-28 119.0
Chla5g01925 . 9 834 B3 DNA Binding Superfamily AT5G62000 56.69 0.0 894.0
Chla6g06812 . 112 247 B3 DNA Binding Superfamily AT3G19184 47.794 4.86e-36 130.0
Chla6g06832 . 112 214 B3 DNA Binding Superfamily AT3G19184 57.282 4.59e-34 128.0
Chla8g04266 . 1 796 B3 DNA Binding Superfamily AT5G37020 65.821 0.0 1003.0
Chla9g04849 . 334 381 B3 DNA Binding Superfamily AT1G59750 59.184 7.40e-11 57.4
Chla1g02317 ACH 75 199 B3 DNA Binding Superfamily AT5G42700 42.4 3.90e-29 107.0
Chla2g02757 . 1 668 B3 DNA Binding Superfamily AT4G30080 52.594 0.0 640.0
Chla3g02571 . 737 790 B3 DNA Binding Superfamily AT1G19850 48.148 3.48e-06 43.1
Chla5g06524 . 62 772 B3 DNA Binding Superfamily AT5G60450 48.704 0.0 621.0
Chla6g00761 . 178 590 B3 DNA Binding Superfamily AT2G33860 47.887 1.48e-119 360.0
Chla4g05520 . 156 289 B3 DNA Binding Superfamily AT1G05930 33.571 1.28e-11 62.0
Chla1g03722 . 8 698 B3 DNA Binding Superfamily AT2G30470 44.879 0.0 580.0
Chla9g04290 . 4 137 B3 DNA Binding Superfamily AT5G66980 34.815 7.99e-20 82.4
Chla2g03661 . 170 289 B3 DNA Binding Superfamily AT1G05930 36.508 3.53e-16 74.7
Chla3g05393 . 367 444 B3 DNA Binding Superfamily AT2G33860 37.179 6.83e-08 47.4
Chla2g00687 . 292 376 B3 DNA Binding Superfamily AT2G30470 51.724 6.25e-21 87.0
Chla4g05483 . 156 289 B3 DNA Binding Superfamily AT1G05930 33.571 9.34e-13 65.1
Chla2g07556 . 739 790 B3 DNA Binding Superfamily AT1G19850 52.83 4.96e-09 52.4
Chla9g03953 . 296 427 B3 DNA Binding Superfamily AT4G21550 44.03 7.84e-24 106.0
Chla7g03266 . 1 591 B3 DNA Binding Superfamily AT2G46530 52.209 0.0 568.0
Chla8g03155 ACH 45 197 B3 DNA Binding Superfamily AT3G26790 41.83 1.65e-36 130.0
Chla4g05530 . 167 289 B3 DNA Binding Superfamily AT1G05930 30.769 1.29e-11 62.8
Chla2g07680 . 167 289 B3 DNA Binding Superfamily AT1G05930 28.244 9.61e-08 48.1
Chla4g05486 . 178 289 B3 DNA Binding Superfamily AT1G05930 33.333 8.02e-10 53.1
Chla6g06844 ACH 33 199 B3 DNA Binding Superfamily AT5G42700 36.905 1.18e-29 111.0
Chla4g06692 . 7 751 B3 DNA Binding Superfamily AT4G32010 45.262 0.0 607.0
Chla3g04493 . 9 142 B3 DNA Binding Superfamily AT5G66980 35.556 3.46e-23 94.0
Chla7g03552 . 9 130 B3 DNA Binding Superfamily AT5G66980 36.585 2.47e-22 92.8
Chla4g05493 . 182 289 B3 DNA Binding Superfamily AT1G05930 35.965 2.98e-09 54.7
Chla7g01902 . 173 220 B3 DNA Binding Superfamily AT5G62000 48.077 1.05e-09 54.7
Chla1g07141 . 981 1165 B3 DNA Binding Superfamily AT5G20730 60.0 2.25e-64 211.0
Chla1g02129 . 284 358 B3 DNA Binding Superfamily AT2G28350 85.333 1.04e-43 150.0
Chla9g01039 . 12 581 B3 DNA Binding Superfamily AT2G46530 54.5 0.0 587.0
Chla1g02318 . 5 225 B3 DNA Binding Superfamily AT3G19184 60.793 4.09e-80 239.0
Chla9g03928 . 296 407 B3 DNA Binding Superfamily AT4G21550 39.474 5.41e-18 87.8
Chla7g03630 . 92 211 B3 DNA Binding Superfamily AT5G42700 41.732 5.45e-24 97.4
Chla2g01113 . 291 396 B3 DNA Binding Superfamily AT2G30470 42.056 3.97e-23 92.0
Chla2g06141 . 1 229 B3 DNA Binding Superfamily AT3G19184 42.489 1.63e-42 143.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chla B3 1.5e-11 CL0405 TF B3