AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06911 ATGGCGAATGTATCATCATCATCTTCTTATTCATTATTACTATTACCTCCTCCACGATTTTCTTCTTCTTCGTTGTTTTTTGCAAATCCTAATTTGAAGATGAATAATAATAATTCGATTAAACACCGATCTGATCTACGTGTCTTCTCTATGCGTCGACCCTTAAAAGCAACAGTAGTGACCGGACAGTCATGGAACACATCAGTTCTCGAAAGCAAAACACCAGTACTAGTTGAGTTCTACGCCAGTTGGTGTGGGCCATGCCAGATGGTGCACCGAGTGATTGATGAGATCGCAGGCGAGTATGCTGGTAAGGTCAAGTGTTTCGTGCTGAATGCTGACCAAGACCCACTAATCGCTGAAGAATACGACATCAAGGCTGTACCCATTGTGCTGTTATTCAAGAACGGTCAGAAATGTGAGTCGGTGGTTGGGACCATGCCTAAAGAATTCTATGTGGCTGCTATTGAAAGGGTCTTGTCATCTTCATCTTGA 495 42.83 MANVSSSSSYSLLLLPPPRFSSSSLFFANPNLKMNNNNSIKHRSDLRVFSMRRPLKATVVTGQSWNTSVLESKTPVLVEFYASWCGPCQMVHRVIDEIAGEYAGKVKCFVLNADQDPLIAEEYDIKAVPIVLLFKNGQKCESVVGTMPKEFYVAAIERVLSSSS 164
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06911 164 ProSiteProfiles Thioredoxin domain profile. 46 161 IPR013766 -
Chla6g06911 164 FunFam Thioredoxin 52 163 - -
Chla6g06911 164 CDD TRX-family 68 157 - -
Chla6g06911 164 Gene3D Glutaredoxin 57 163 - -
Chla6g06911 164 PRINTS Thioredoxin family signature 76 84 - -
Chla6g06911 164 PRINTS Thioredoxin family signature 84 93 - -
Chla6g06911 164 PRINTS Thioredoxin family signature 124 135 - -
Chla6g06911 164 ProSitePatterns Thioredoxin family active site. 77 95 IPR017937 -
Chla6g06911 164 Pfam Thioredoxin 58 156 IPR013766 -
Chla6g06911 164 PANTHER GEO12009P1 31 160 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Chla6g06911 164 SUPERFAMILY Thioredoxin-like 58 162 IPR036249 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06911 K03671 thioredoxin
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr1:90380901 Chla6g06911 Chla-Chr6:281636016 dispersed
Chla Chla-Chr6:281636016 Chla9g02412 Chla-Chr9:78438582 dispersed
Chla Chla-Chr6:281636016 Chla6g06898 Chla-Chr6:281140736 transposed