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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla6g06962 ATGGACGCGGAACCTGCCAAGACCTCGTCTCCTGTTAAAGACGTGGATGTAGAAGCTTCTGTCCCTGTAGACAACGGACACGATAAAGTTGCCCAAGAACAAGACACATCTTCCAAGTTCTCGGTTTCTAGCATAAGCACGTGGGCAAAAAGTTTGAAGCTTCCTCAACCTTTAGGAGGCACACAAGCCGAGTCGTCATCATCTGAAAACACTGGAAAATCGTCTTTTTCGCGTCTGGCTAGTGGGCTTGGGTTGAAGTTATCTCCAAAGGCTCCCCAAGAAGTTGATAGTCCCGGCGAATCTCCCAAAACGCCACAAGGTGGTTTCATTGGGACCATCACTAAAGGTTTTGTTGACACTTCTAAAAATGCAGTGAAGGCTGTGCAAGTAAAGGCTCGTCATGTTGTATCACAAAACAAACGAAGATATCAGGAAGGAGGATTTGATTTAGATATGACGTACATCACTGAGAATATAATTGCAATGGGATTCCCTGCTGGTGATATGAGCTCAGGTTTCTTTGGATACGTTGAGGGATTTTACCGTAACCAGATGGAGGAAGTTATCAAGTTCTTTGAAACCAATCACAAGGACAAGTACAAGGTTTACAATCTATGCTCAGAGAGGCTATATGATGCATCACTGTTTGAAGGAAAGGTTGCTTGTTTCCCCTTTGATGATCACAATTGTCCTCCGATTCAACTGATCATATCATTTTGCCATAGTGCCTACTCATGGTTGAAAGAGGACATAGAGAATGTTGTGGTTGTTCACTGTAAGGCCGGAATGGCAAGGACAGGCTTAATGATCACAAGTCTGCTTTTATTTCTAAAGTTTTTCCCTACAGCTGAGGAATCCATAGACTATTACAACCAAAAAAGATGTGTTGACGGGAAAGGACTTGTTCTCCCAAGTCAAATTAGATACGTCAAGTATTTTGAACGTGTTCTAACATACTTCAATGGAGAAGATCAACCTGGGCGCAGGTGTATGCTTAGAGGAATCCGCCTTCATAGGTGTCCTTATTGGATCAGACCATCTATTACTGTCTCAGATCATAACGGTGTTCTTTTTTCTACCAAAAAGCATCCCAGAACCAAGGACCTTTCTCCTGAAGATTTTTGGTTTGCTGCACCTAGAAAGGGTATAATGGTCTTTGCTCTCCCTGGGGAGCCTGGTCTGACAGAATTATCTGGAGATTTTAAGATTCAATTTCATGACCGACAAGGAGACTTCTACTGTTGGCTGAACACGACAATGATGGAGAACAGGACAATCCTAACCACCAATGATCTTGACGGGTTTGACAAGAGGAAACTACCATCCCCAGGTTTTCAAGTAGAGGTTGTAGTTGTGGACTACGACCCCACAGCTCAACCGAAACCGCAAACTGAAAGTACACCCAAACCAGCTGAGAGCACAACCACAACTCCCACCCCACCTCCCCCCTCTGATACCACCTCTACCATACCGAAAGATTCTGCAACTAGTGAAAAAGATGATGAGGTGTTCTCTGATAACGAGTCAACCGGAACCAATACTAATTCTAGCAAAATCGAAAATTTATCTGATAAAACCAAGAATATCTCTATATCAAATCCAGGATCCAAGCAGACCGACACCACCAGTGGGCCCAAACAGAGCGGCTCAAACCCTATCGGTGAGGTAAGTGATTTTAAGGCAATGGCAGCGGATGCATCTGTTTTCACTTTTGGAGATGACGAAGACTATGAAAGTGACTGA 1743 43.78 MDAEPAKTSSPVKDVDVEASVPVDNGHDKVAQEQDTSSKFSVSSISTWAKSLKLPQPLGGTQAESSSSENTGKSSFSRLASGLGLKLSPKAPQEVDSPGESPKTPQGGFIGTITKGFVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNQMEEVIKFFETNHKDKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIISFCHSAYSWLKEDIENVVVVHCKAGMARTGLMITSLLLFLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGEDQPGRRCMLRGIRLHRCPYWIRPSITVSDHNGVLFSTKKHPRTKDLSPEDFWFAAPRKGIMVFALPGEPGLTELSGDFKIQFHDRQGDFYCWLNTTMMENRTILTTNDLDGFDKRKLPSPGFQVEVVVVDYDPTAQPKPQTESTPKPAESTTTTPTPPPPSDTTSTIPKDSATSEKDDEVFSDNESTGTNTNSSKIENLSDKTKNISISNPGSKQTDTTSGPKQSGSNPIGEVSDFKAMAADASVFTFGDDEDYESD 580
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla6g06962 580 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 126 323 - -
Chla6g06962 580 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 154 321 IPR029021 -
Chla6g06962 580 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 128 536 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Chla6g06962 580 ProSiteProfiles C2 tensin-type domain profile. 327 454 IPR014020 -
Chla6g06962 580 MobiDBLite consensus disorder prediction 88 109 - -
Chla6g06962 580 SMART PTEN-C2-2 325 453 IPR014020 -
Chla6g06962 580 ProSitePatterns Tyrosine specific protein phosphatases active site. 257 267 IPR016130 GO:0016311(InterPro)
Chla6g06962 580 MobiDBLite consensus disorder prediction 20 34 - -
Chla6g06962 580 MobiDBLite consensus disorder prediction 507 554 - -
Chla6g06962 580 MobiDBLite consensus disorder prediction 35 51 - -
Chla6g06962 580 MobiDBLite consensus disorder prediction 58 76 - -
Chla6g06962 580 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 397 451 IPR035892 -
Chla6g06962 580 Gene3D Protein tyrosine phosphatase superfamily 126 323 IPR029021 -
Chla6g06962 580 MobiDBLite consensus disorder prediction 1 76 - -
Chla6g06962 580 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 255 294 IPR000387 GO:0016311(InterPro)
Chla6g06962 580 MobiDBLite consensus disorder prediction 457 558 - -
Chla6g06962 580 ProSiteProfiles Phosphatase tensin-type domain profile. 141 320 IPR029023 -
Chla6g06962 580 Gene3D - 328 454 - -
Chla6g06962 580 MobiDBLite consensus disorder prediction 459 473 - -
Chla6g06962 580 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 223 275 - -
Chla6g06962 580 Pfam PTEN2, C2 domain 327 455 - -
Chla6g06962 580 CDD PTP-PTEN 151 315 IPR045101 GO:0016791(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla6g06962 K01110 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr6:282761200 Chla6g06962 Chla-Chr6:283169971 dispersed
Chla Chla-Chr6:283169971 Chla9g04255 Chla-Chr9:157499854 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chla8g02910 . 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 73.308 0.0 803.0
Chla9g01709 . 72 462 Protein tyrosine phosphatase (PTP) family AT3G55270 53.234 5.94e-142 431.0
Chla1g00307 . 261 341 Protein tyrosine phosphatase (PTP) family AT3G09100 50.617 1.34e-13 68.9
Chla26940g00010 . 73 161 Protein tyrosine phosphatase (PTP) family AT5G56610 73.034 9.73e-41 140.0
Chla5g03270 . 19 737 Protein tyrosine phosphatase (PTP) family AT3G10550 67.545 0.0 1002.0
Chla8g01886 . 1 372 Protein tyrosine phosphatase (PTP) family AT3G52180 43.662 2.12e-102 306.0
Chla26915g00001 . 16 307 Protein tyrosine phosphatase (PTP) family AT2G35320 50.492 8.06e-103 300.0
Chla7g03254 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 32.738 2.54e-20 84.3
Chla7g05597 . 1 912 Protein tyrosine phosphatase (PTP) family AT5G23720 62.2 0.0 1080.0
Chla6g03253 . 1 315 Protein tyrosine phosphatase (PTP) family AT2G35680 52.381 2.16e-103 303.0
Chla2g01495 . 16 203 Protein tyrosine phosphatase (PTP) family AT1G05000 63.298 1.43e-82 241.0
Chla2g06815 . 459 536 Protein tyrosine phosphatase (PTP) family AT3G01510 37.975 1.49e-06 48.9
Chla8g05706 . 6 186 Protein tyrosine phosphatase (PTP) family AT3G02800 67.956 3.76e-90 261.0
Chla3g06433 . 265 323 Protein tyrosine phosphatase (PTP) family AT3G52180 40.984 9.43e-07 48.9
Chla9g00184 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 34.706 8.43e-22 88.2
Chla6g06946 . 41 611 Protein tyrosine phosphatase (PTP) family AT3G19420 70.261 0.0 813.0
Chla8g00848 . 64 282 Protein tyrosine phosphatase (PTP) family AT3G10940 83.105 9.72e-142 397.0
Chla3g06425 . 265 323 Protein tyrosine phosphatase (PTP) family AT3G52180 40.984 8.00e-07 48.9
Chla6g00126 . 43 210 Protein tyrosine phosphatase (PTP) family AT1G05000 61.31 1.54e-75 225.0
Chla3g04163 . 70 131 Protein tyrosine phosphatase (PTP) family AT3G52180 82.258 1.68e-31 113.0
Chla6g03958 . 33 168 Protein tyrosine phosphatase (PTP) family AT5G56610 76.471 2.14e-78 231.0
Chla4g00892 . 60 653 Protein tyrosine phosphatase (PTP) family AT5G01290 47.386 1.91e-173 505.0
Chla3g05925 . 182 590 Protein tyrosine phosphatase (PTP) family AT5G01290 39.862 7.33e-89 281.0
Chla3g01417 . 18 239 Protein tyrosine phosphatase (PTP) family AT3G44620 55.405 2.58e-76 228.0
Chla6g06962 . 41 611 Protein tyrosine phosphatase (PTP) family AT3G19420 69.913 0.0 811.0
Chla1g03731 . 36 330 Protein tyrosine phosphatase (PTP) family AT1G71860 51.171 6.76e-106 311.0
Chla7g01664 . 9 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.295 3.58e-86 253.0
Chla2g01510 . 16 203 Protein tyrosine phosphatase (PTP) family AT1G05000 63.298 1.27e-82 243.0
Chla4g02006 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 53.067 0.0 689.0
Chla1g01037 . 21 190 Protein tyrosine phosphatase (PTP) family AT3G23610 57.647 7.88e-71 211.0
Chla4g00899 . 47 639 Protein tyrosine phosphatase (PTP) family AT5G01290 49.513 0.0 547.0
Chla2g02990 . 80 456 Protein tyrosine phosphatase (PTP) family AT3G55270 67.526 0.0 567.0
Chla1g06309 . 30 207 Protein tyrosine phosphatase (PTP) family AT5G56610 73.034 2.28e-94 282.0
Chla2g02955 ACH 6 784 Protein tyrosine phosphatase (PTP) family AT3G55270 45.05 0.0 600.0
Chla4g00210 . 67 644 Protein tyrosine phosphatase (PTP) family AT5G01290 51.771 0.0 560.0
Chla7g01620 . 9 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.295 1.31e-84 254.0
Chla6g00098 . 43 210 Protein tyrosine phosphatase (PTP) family AT1G05000 61.31 7.66e-75 223.0
Chla4g02010 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 52.814 0.0 682.0
Chla1g00556 . 1132 1267 Protein tyrosine phosphatase (PTP) family AT5G58160 36.875 1.31e-16 79.7
Chla8g01909 . 151 840 Protein tyrosine phosphatase (PTP) family AT3G10550 61.769 0.0 891.0
Chla3g03650 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.913 2.29e-116 337.0
Chla7g05631 . 54 638 Protein tyrosine phosphatase (PTP) family AT5G01290 51.618 0.0 593.0
Chla9g04255 . 50 611 Protein tyrosine phosphatase (PTP) family AT3G19420 61.404 0.0 709.0
Chla8g01505 ACH 1 473 Protein tyrosine phosphatase (PTP) family AT3G55270 67.223 0.0 662.0
Chla2g04448 . 88 230 Protein tyrosine phosphatase (PTP) family AT3G52180 51.852 3.53e-42 152.0
Chla9g04118 . 1 395 Protein tyrosine phosphatase (PTP) family AT5G39400 56.281 3.66e-159 453.0
Chla6g06191 . 55 207 Protein tyrosine phosphatase (PTP) family AT1G05000 80.392 2.72e-95 274.0
Chla4g03898 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 2.15e-06 47.0
Chla1g00570 . 1139 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 80.357 1.70e-25 97.4
Chla8g01534 ACH 1 473 Protein tyrosine phosphatase (PTP) family AT3G55270 66.806 0.0 662.0
Chla7g05616 . 7 912 Protein tyrosine phosphatase (PTP) family AT5G23720 63.557 0.0 1118.0
Chla3g01906 . 18 239 Protein tyrosine phosphatase (PTP) family AT3G44620 52.679 2.17e-70 213.0
Chla2g06853 . 459 536 Protein tyrosine phosphatase (PTP) family AT3G01510 37.975 1.45e-06 48.9
Chla3g03471 . 55 212 Protein tyrosine phosphatase (PTP) family AT3G09100 50.625 6.50e-41 144.0
Chla2g02986 ACH 3 784 Protein tyrosine phosphatase (PTP) family AT3G55270 43.521 0.0 586.0
Chla5g07080 . 352 443 Protein tyrosine phosphatase (PTP) family AT3G10550 67.391 1.85e-31 114.0
Chla2g06998 . 190 320 Protein tyrosine phosphatase (PTP) family AT3G10550 28.743 4.67e-09 54.7
Chla2g03798 . 303 340 Protein tyrosine phosphatase (PTP) family AT3G09100 44.737 1.12e-06 44.3
Chla4g00903 . 47 639 Protein tyrosine phosphatase (PTP) family AT5G01290 46.875 4.13e-175 509.0
Chla8g00878 . 64 282 Protein tyrosine phosphatase (PTP) family AT3G10940 83.105 1.08e-141 397.0
Chla7g02827 . 121 158 Protein tyrosine phosphatase (PTP) family AT3G10940 68.421 3.40e-13 67.0