AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla9g03238 ATGGAGTTGCAGAATCAAGTAGCACAGGCGGTGCACGTGCTGAACCACGATACGCAATCGTGTAACCGAGTATCAGCTAATCAGTGGTTAGTTGAGTTTCAACAAACAAATGCTGCTTGGGAGATTGCCACTTGTATATTGACGGCATCTGATAATAAGCAGTTTGTTTCCGATTTCGAAGTCGAATTCTTCGCTGCTCAGCTTCTTAAACGAAAGATCCAAAATGAGGGACATTGTCTCCAGCTGGAAGCAAAAGAATCTCTAGTTAATGCTCTCCTTTTGGCTGCTAAAAGATTTAGTTTAGGCCCATCCCAGCTCTTAACACAGATTTGTCTGGCTCTATGCATGCTCATACTTCATGCGGTGGAGTACTACAAACCAATAGAGAAGCTCTTTTACAGTCTTCAGACCCTGCAAGGTCAAGATGATGGCAATATCGTTGTTTTGGAAATGCTCACGGTCTTACCAGAGGTCGTTGAAGATGAATGTGCTAATTATAGAACCAAGTCCGGTCAAAGAATTGACTATGGCCCAGAGCTACTCTCACATACATCCGCAGTGCTAGAGTTCCTAAAGCAGCAATCCGAAGAAAGCTTTAATGGTGCCATTCAACTACATGAACGGAGCAGAAAGATACTGCGCTGTTTGTTAAGTTGGGTTCGAGCAGGATGTTTCTCGGAAATTTTGCCAGTTTCGTTATTAGCCCATCCGCTTCTTAATTTTGTTTTCAATTCTTTACAGGTTTCATCCTCATTTGATCTGGCAATTGAGGTTTTAATTGACCTTGTTGGCCGACATGAGGGTTTACCACAAGTTCTTCTCAGCAAAGTAGGATTTCTTAAAGACGTTCTTCTACGAGCATTCAATGGTGGAAATGAGAAAGTAATTAGTGGTCTTGCATGCTTGATGTCTGAGATTGGTCAGGCTGCTCCATATTTGATCATAGAAGCCCATTCGGAAGCACTTATACTGGTGGATGCACTTTTGAGCTGTGTATCATTTCCAAGTCAAGATTGGGAGATTGCAGACTCAACTTTGCAGTTCTGGTGTAGTCTTGCAAGCAATATTGTTCGAATGGATGATGAGAATACAGAGAATAGCAAACATGTCAAAGATGTTTTTTCACCAGTATTTTCAGCATTGCTTGATGCTCTTTTGATGCGTTCTCAGGTGGATGATTCAACATATACAAATGAGACTGCACCAAGGGACTTGCCAGATGGCCTTGCTCAGTTTAGGTTAAATCTAGTGGAGCTTATGGTGGACATTTGCCAGCTTCTAAAGTCTGCTGTGTTTTTGCAAAAGATTTTTTTTGGTGGTTGGCTGTCTTCAAACGCACAAATTCCTTGGAAGGAGGTGGAAACCAGAATGTCTGCTCTTAACGTGGTTGCTGATGTAGTACTGCATGAAGGTCAAACATTTGATCTCTCAATGGTCTTGCACTTGGTCACAGTTCTGTGTGATCATGCATCATATGAACCGAAAGGCTTTATGTGCATTGTACATAAATCACTTGCAGATGTTATTGGTTCATATTCGAAGTGGATGTCTTCTTACGTAACTAATGCCAGGCCATTGCTTTTATTTTTTGCAGCTGGTATGTCAGAGCCTTTATGCTCACATGCTTGTGCAACTGCCTTCAGGAAGATCTGTGAAGATGCTACCAAAGGATTGGAAAAGAGACAGTTACCTCTGGAAGACGAGGAAGATATTATTAGTGCTATTACGTTGATACTTGGAAGCCTTCCTAACTTGGAATTAAGAAACAATCTGTTGCTTAAGTTGCTTTCTCCTAGTTGTGGATCTATTGGGAAACTTCTTGATGGAGATCGTGTCCAGTCTTTGAGGCAACTACCAAGTGCTTATACTCATCTTGTCAACTCTGCAACGAGGGGTTTCTTCAGGATAGGAGCTGTATTCAGTCACCTTGTAATGGCACCCACTACATGTCATGATATAGACAATTCTATGATAGTCGTTCTTGAAAGTTTTTGGCCTCTGCTTGAAAAATTCTTTCAGTCAGAGCACATTGAGAATGCAAGTTTATCCGTGGCTGCATGCAGGGCTCTCTCACAAGCAATTAAGTCTGCAGGCCATCATTTTGTTACACTGTTGCCAAAAGTTTTGGATTACCTATCAACAAGTTTTGTTTCATTTCAAACTCATGAGTGCTACCTTAAAACAGCTTCTGTTGTCGTTGAAGAATTTGGTAATAAGGAGGAATATGGACCTCTATTTATCAGCACGCTTGAAAGATTTACAAATGCATCATCAGTGATGTCTCTAAATTCTTCATATGTGTGTGATCAAGAGCCCGATCTTGTTGAGGCATATTGCAGTTTTACATCAATATTTCTTCACAGTTCGTCAAAGGAAGTAGTAGCTTCTTCTGGTCCTCTTCTAGAAGTTTCCTTTCAGAAAGCAGCTATTTGTTGTACAGCTATGCATCGTGGAGCAGCACTTGCTGCAATGTCGTATATGTCTTGTTTTCTAGAGTTTTGCATGACTTCATTGCTGGAATCAGCCACTTGTAACTCTGAATTAAATGTTACATCAATGGCGGTTCATGTAATATCTCACAGTGGTGAGGGACTTGTATCAAATGTGGTATATGCTTTACTTGGTGTTTCTGCAATGTCAAGGGTTCATAAATCTGCAACAATATTGCAGCAGTTGGCAGCAGTATGCAGTTTTAGTGAGAAAACAAAGTGGAAGTCTATTCTTTGTTGGGATTCTTTGAATAATTGGCTACATGCTGCGGTACGGAGTCTACCTGGTGAGTACTTGAGACAGGGAGAAGCAGAATCTTTAGCACCGGTATGGCTAAAAGCCTTGGGTGATGCAGCAATTGATTATGTTGAAAGCAGAACGAGCCATGGAGAGAAGAATCATAAACATATGCGGGGAAAAGGTGGCAGGATGCTTAAGTATCTATTTCGTGAATTTGTTGATAGTCATCGTAATATTGTTACATGA 2976 41.03 MELQNQVAQAVHVLNHDTQSCNRVSANQWLVEFQQTNAAWEIATCILTASDNKQFVSDFEVEFFAAQLLKRKIQNEGHCLQLEAKESLVNALLLAAKRFSLGPSQLLTQICLALCMLILHAVEYYKPIEKLFYSLQTLQGQDDGNIVVLEMLTVLPEVVEDECANYRTKSGQRIDYGPELLSHTSAVLEFLKQQSEESFNGAIQLHERSRKILRCLLSWVRAGCFSEILPVSLLAHPLLNFVFNSLQVSSSFDLAIEVLIDLVGRHEGLPQVLLSKVGFLKDVLLRAFNGGNEKVISGLACLMSEIGQAAPYLIIEAHSEALILVDALLSCVSFPSQDWEIADSTLQFWCSLASNIVRMDDENTENSKHVKDVFSPVFSALLDALLMRSQVDDSTYTNETAPRDLPDGLAQFRLNLVELMVDICQLLKSAVFLQKIFFGGWLSSNAQIPWKEVETRMSALNVVADVVLHEGQTFDLSMVLHLVTVLCDHASYEPKGFMCIVHKSLADVIGSYSKWMSSYVTNARPLLLFFAAGMSEPLCSHACATAFRKICEDATKGLEKRQLPLEDEEDIISAITLILGSLPNLELRNNLLLKLLSPSCGSIGKLLDGDRVQSLRQLPSAYTHLVNSATRGFFRIGAVFSHLVMAPTTCHDIDNSMIVVLESFWPLLEKFFQSEHIENASLSVAACRALSQAIKSAGHHFVTLLPKVLDYLSTSFVSFQTHECYLKTASVVVEEFGNKEEYGPLFISTLERFTNASSVMSLNSSYVCDQEPDLVEAYCSFTSIFLHSSSKEVVASSGPLLEVSFQKAAICCTAMHRGAALAAMSYMSCFLEFCMTSLLESATCNSELNVTSMAVHVISHSGEGLVSNVVYALLGVSAMSRVHKSATILQQLAAVCSFSEKTKWKSILCWDSLNNWLHAAVRSLPGEYLRQGEAESLAPVWLKALGDAAIDYVESRTSHGEKNHKHMRGKGGRMLKYLFREFVDSHRNIVT 991
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla9g03238 991 Pfam Exportin 1-like protein 104 259 IPR013598 -
Chla9g03238 991 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 5 987 IPR051345 GO:0005737(PANTHER)|GO:0006606(PANTHER)
Chla9g03238 991 SUPERFAMILY ARM repeat 1 835 IPR016024 -
Chla9g03238 991 Gene3D - 2 940 IPR011989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla9g03238 K15436 transportin-3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr7:13438633 Chla9g03238 Chla-Chr9:111411038 dispersed
Chla Chla-Chr9:38865649 Chla9g03238 Chla-Chr9:111411038 dispersed