AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla9g03245 ATGGCGGCGGATCAGCTGAATAAGTGTTCTAAAGTAAGCAACGTGACCCATCACACTTCTTGGGAGCTGCAGAAAACGAAGAAAGCAAAATTTTCTCATTATGAGTTAAATACACAATCAAATATTTCTCTCGAGTGGGATGACAAGAAGAAAGATGTTGTTCCTAAGAAGGAGCAGATAAGTATTGCTCGTAGAGAGTTGACACCGTTTCTTCCTCGTGTTCCACATTGCCAGAATGTCTTGGGTGATGTCTTTGCAGCTCCTTCTGAGCTATTTGAACTGAATGACTTGACTGATTTGCTGTCGTATGAGGTTTGGCAAACTCAATTGTCTGTACAAGAAAGAGAGTTTCTGACCCAGTTTCTTCCAGAAGGAGTTGACCCACATACTGTTGTAGATGACTTGTTATCTGGGAGCAATTTTTGCTTCGGAAGTCCATTCCAAAAATGGGGTACTTCAGTTTGTTCTGGTGATTGTCATCCTGATGCTGTTCTTCGTCAAGAACAGTGTAACAAGTCTAACAAAATAGCATATTATAAGGAATTGCAAGAGTACCATACCAAAATGATAGGGAGTCTGCAATTGTGGAAGGAAACATGGGCATGCTGTGTGAATCCGGAAAATGACTTTAGCCAACAGATACCGAGGCCCATGGATGAATATGACAAAAATGGTTCCTCACATCAGAAAGACATACATGGTAGTCCTGAAGATGATGTGGGTGCAACATCTGATTCTGGTTATTTCGATGCTGAAGATAAGTCATATAGTAGCAATAGCCCGGATGTAGCAATCATGAACGGAGAAACTTCAACAAGGGTCTCGAAAATGGAATCAGGGAGCAATTATTTTGACTCTTCAGTTGGATCGAAATCTGTAGCAAGATCTAGAAAAGGAGATAAATTACGCAGGCTCAGTGTAGAGTGTGGTGATGGTGCCAAATATATGTCATATATCAAGGTTAGCAAAGTTCAGCATGAACAAGTTAAAAGCAGTATGAAACACTCTAACACCGGTATCCAACAGAGGTCTCTCAGTCACGTTTTAGGCAATCTTGATAGTTTCTGTGTTATACCATATGAAGTGTTTGAAGAAGAAGAGAGACTGAAGCTGCACGAACACTGGTCTAATTTGGCAAAGAAAGATCTCCCTGCAGGCTTTGCAAATTGGAATAGTTGGCGATCTGCCAGGTGGCAGTTAGGAATATCGTTAAGGAAAGAAATGGAAGATAAAGTTAAGTCAAATGATCAACCAGTTTCAAATTTTTGTAATCAGGATGAGGAGTTAAAATATGGTGATGTTCAGGACAACATGGAACAAAACGGCTATGCAGTGCTCCATTCAGAGGCGAATCTTAATGCAGAAAACCATGAAACAGCAATGGAAGTTGAACCAAATGATCAGCCTAATCAATGCTCGCGTCAGAATCAGCATCTACCACAGATTAATGTAATACATAATGATGGCCAAAACTTCTGCTCCATGCCCATGGATGCTGCCAATGATGATGTATTGATCCAGTCAAGTGCTTTTCCTTCTAGTCTATGTGAATATCCCGCAAGTTTAAATCGTGCAGATGCATCTGTTGGTGAACAAATATGGCCTGAAGTTAGCTTACCACAAAGTGTATACTATCACCATCCGACATCTTTAAGCGATGGATACACTTCTGTTGGTGAATTGTCACTAGGCCAGTCGAGGCAACCAATTGTTCTAGAATCCGAGTTACTACAAAAGGATCCTCTTAGAAGTTTTATGCACAAAGGATCTGATGGTGGTGATTCTTTCTTTAATCCATATGCTAATCAAGACCGTAATGAATTACTACTCCAATCACTTTATAAAGATCCCGGGAATTCTCATTATCTTCATGAACAGAAGCTTTCTAGTTTATCTTTCCACCCAACCGTGAGTGACCCGATGCTGGGAACCAATCAATTTTCTAGAAATTTGTGCCCATCGATGCTAATGGATCCTGTGCTTCCGACCATTCAAGAAAACTTATATTCAGTTCCAAGGCAAGAACACTTGTTGCCAATGAATAACGTTCACGATTGGCTCGGGAATGGTGGTATTAACCTTCCCATGACATCATCATCCCATCATCGCTAA 2112 40.67 MAADQLNKCSKVSNVTHHTSWELQKTKKAKFSHYELNTQSNISLEWDDKKKDVVPKKEQISIARRELTPFLPRVPHCQNVLGDVFAAPSELFELNDLTDLLSYEVWQTQLSVQEREFLTQFLPEGVDPHTVVDDLLSGSNFCFGSPFQKWGTSVCSGDCHPDAVLRQEQCNKSNKIAYYKELQEYHTKMIGSLQLWKETWACCVNPENDFSQQIPRPMDEYDKNGSSHQKDIHGSPEDDVGATSDSGYFDAEDKSYSSNSPDVAIMNGETSTRVSKMESGSNYFDSSVGSKSVARSRKGDKLRRLSVECGDGAKYMSYIKVSKVQHEQVKSSMKHSNTGIQQRSLSHVLGNLDSFCVIPYEVFEEEERLKLHEHWSNLAKKDLPAGFANWNSWRSARWQLGISLRKEMEDKVKSNDQPVSNFCNQDEELKYGDVQDNMEQNGYAVLHSEANLNAENHETAMEVEPNDQPNQCSRQNQHLPQINVIHNDGQNFCSMPMDAANDDVLIQSSAFPSSLCEYPASLNRADASVGEQIWPEVSLPQSVYYHHPTSLSDGYTSVGELSLGQSRQPIVLESELLQKDPLRSFMHKGSDGGDSFFNPYANQDRNELLLQSLYKDPGNSHYLHEQKLSSLSFHPTVSDPMLGTNQFSRNLCPSMLMDPVLPTIQENLYSVPRQEHLLPMNNVHDWLGNGGINLPMTSSSHHR 703
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla9g03245 703 PANTHER NFRKB-RELATED 1 432 IPR024867 GO:0031011(InterPro)
Chla9g03245 703 MobiDBLite consensus disorder prediction 250 265 - -
Chla9g03245 703 MobiDBLite consensus disorder prediction 211 265 - -
Chla9g03245 703 CDD DEUBAD-NFRKB 90 196 - -
Chla9g03245 703 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 88 199 IPR044867 -
Chla9g03245 703 MobiDBLite consensus disorder prediction 221 238 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla9g03245 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr9:111543197 Chla6g03946 Chla-Chr6:136271889 dispersed