AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla9g03250 ATGTCCACAAATATTAACCTATATGGAGCTAATACAACCTACCATAGATCACTATACTCACACCAGCACCTGAGTTTTGCATCTTCAGTTGCGTCGTTTCGCGGAACGTGTAGAGTGGTTCAGGGTCGGGTTTCGTGTAGGGGGAGTGGGTTTAAGGTGGTTTGTAATGCGCAGAAAGTTGAGGTTCTTACTAGAAGTGAAAATGATATACGGGGTTTGGAAGGAGTGAGTAAGGAGTTGTCGTGTGTGATGAAGTTTGGTGGATCGTCTGTTGCGTCTGCTGAACGGATGAAAGAAGTGGCGGCTCTGATACTTAGGTTTCCGGAAGAAAGTCCGGTTATTGTTTTGTCTGCTATGGGCAAAACCACCAACAAGATTCTATTGGCTGGAGAGAAGGCTAAATGCGGCGAATCAGTTGTGGCTGAAATTAAGGAATTGAGAGAACTCCACCATAGGACAGTGGATGAGCTTGGATTAGATAGATCGATCATTACATTGATTGCTGAACTAAAAGAGTTTACACCACGTACAAGGGACTACCTAGTCTCATTTGGGGAGCGCATGTCCACAAGAATTTTTGCAGCATATTTAAATAAACTAGGTGTCAAAGCCCGCCAATATGATGCATTTGAAATTGGCTTCATAACAACAGATGACTTTACTAATGCGGATATTTTGGAAGAAACATATCCAGCTGTTGCAGAGAGACTTAATGGTGATTGGTTTAAGGATCCTGCAGTTCCTATTGTCACTGGCTTTCTTGGAAAGGGCAAGAAAACTGGTGATGTGACAACATTGGGCAGAGGTGGCAGTGATTTGACTGCCACCACCATTGGTAAAGCTCTTGGGTTGCGAGAAATTCAGGTATGGAAAGATGTAGATGGTGTCTTGACATGTGACCCAAATATACACAAGGGTGCAGAACCTGTGCCATATTTGACTTTTGATGAGGCAGCTGAACTTGCATATTTTGGTGCCCAGGTCCTACATCCTCAGTCTATGAGGCCTGCAAGAGAGGGTGACATACCTGTTAGGGTTAAAAATTCGTATAACCCTAATGCTCCTGGTACCCTAATCACTAAATCAAGAGATATGAGTAAGGCAGTACTAACCAGCATTGTTTTGAAACGTAATGTAACTATGTTAGACATCGTTAGCACTCGCATGCTTGGCCAATTTGGATTCCTAGCTAAGGTTTTCTCAATTTTTGAGGACTTGGGTATATCCGTGGATGTTGTAGCTACTAGTGAAGTTAGCATTTCCCTAACGTTAGATCCTTCAAAGCTGTGGAGCAGGGAGTTGATTCAGCAGGAACTTGATCATGTTGTGGAAGAACTTGAAAAAATTGCTAAAGTGAATCTCCTGCAACATAGATCGATTATTTCACTCATTGGGAATGTTCAGAGGTCCTCACTTGTATTGGAAAAGGCATTTCGTGTTCTTCGTGTGAATGGAGTGAATGTTCAGATGATATCACAAGGAGCATCGAAGGTGAATATATCACTTATAGTAAATGACAGTGAATCAGAAAAATGCGTGAGAGCTCTGCATTCGGCTTTCTTTGAGGATGATATGTCTGATATCAACTGA 1590 42.33 MSTNINLYGANTTYHRSLYSHQHLSFASSVASFRGTCRVVQGRVSCRGSGFKVVCNAQKVEVLTRSENDIRGLEGVSKELSCVMKFGGSSVASAERMKEVAALILRFPEESPVIVLSAMGKTTNKILLAGEKAKCGESVVAEIKELRELHHRTVDELGLDRSIITLIAELKEFTPRTRDYLVSFGERMSTRIFAAYLNKLGVKARQYDAFEIGFITTDDFTNADILEETYPAVAERLNGDWFKDPAVPIVTGFLGKGKKTGDVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIHKGAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITKSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAKVNLLQHRSIISLIGNVQRSSLVLEKAFRVLRVNGVNVQMISQGASKVNISLIVNDSESEKCVRALHSAFFEDDMSDIN 529
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla9g03250 529 ProSiteProfiles ACT domain profile. 384 457 IPR002912 -
Chla9g03250 529 Gene3D Aspartokinase, catalytic domain 120 201 IPR042199 -
Chla9g03250 529 FunFam Aspartokinase 175 359 - -
Chla9g03250 529 PANTHER ASPARTATE KINASE 80 522 - GO:0004072(PANTHER)|GO:0005829(PANTHER)|GO:0009089(PANTHER)|GO:0009090(PANTHER)|GO:0009570(PANTHER)
Chla9g03250 529 CDD ACT-AK1-AT-1 379 456 IPR047896 -
Chla9g03250 529 FunFam Aspartokinase 380 451 - -
Chla9g03250 529 Pfam ACT domain 461 520 IPR054352 -
Chla9g03250 529 Gene3D - 380 455 - -
Chla9g03250 529 SUPERFAMILY ACT-like 368 466 IPR045865 -
Chla9g03250 529 SUPERFAMILY ACT-like 449 524 IPR045865 -
Chla9g03250 529 Gene3D - 83 359 IPR036393 -
Chla9g03250 529 FunFam Aspartokinase 1 452 521 - -
Chla9g03250 529 NCBIfam aspartate kinase 83 522 IPR001341 GO:0004072(InterPro)|GO:0008652(InterPro)
Chla9g03250 529 SUPERFAMILY Carbamate kinase-like 83 362 IPR036393 -
Chla9g03250 529 FunFam Aspartokinase 120 201 - -
Chla9g03250 529 ProSitePatterns Aspartokinase signature. 83 91 IPR018042 GO:0004072(InterPro)|GO:0008652(InterPro)
Chla9g03250 529 Gene3D - 371 521 - -
Chla9g03250 529 Pfam Amino acid kinase family 82 348 IPR001048 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla9g03250 K00928 aspartate kinase [EC:2.7.2.4]
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Event-related genes

Select Gene_1 Gene_2 Event_name
43162 Chla8g03147 Chla9g03250
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr7:214512070 Chla9g03250 Chla-Chr9:111635801 dispersed
Chla Chla-Chr8:87893098 Chla9g03250 Chla-Chr9:111635801 dispersed
Chla Chla-Chr9:111635801 Chla8g03147 Chla-Chr8:92378316 transposed