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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla9g03706 ATGGATCCAGACGCATTATCAAAAGCATTCGTGGAACACTACTACACAACATTCGACACAAACCGAGCAGGCCTAGCCAACCTATACCAGGAATCATCCATGTTGACTTTCGAAGGTCAAAAGATCCAAAGTGCTGTCAACATAGTTAACAAATTAACCTCGTTACCTTTCCAGCAGTGTAAACATAGTATTACAACTGTTGATTGTCAGCCTTCTGGTCCTGCTGGTGGTATGCTTGTTTTTGTTTCCGGTAATCTTCAACTTGCTGGCGAACAACACGCTCTTAAGTTTAGTCAGATGTTCCATTTGATGCCGACAGCACAAGGAAGCTTCTATGTGTTCAACGACATATTCCGCTTGAATTATGCATGA 372 42.2 MDPDALSKAFVEHYYTTFDTNRAGLANLYQESSMLTFEGQKIQSAVNIVNKLTSLPFQQCKHSITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTAQGSFYVFNDIFRLNYA 123
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla9g03706 123 FunFam Nuclear transport factor 2 1 123 - -
Chla9g03706 123 CDD NTF2 2 122 IPR018222 -
Chla9g03706 123 Gene3D - 1 123 - -
Chla9g03706 123 PANTHER NUCLEAR TRANSPORT FACTOR 2 2 122 IPR045875 GO:0006913(InterPro)|GO:0006913(PANTHER)|GO:0044613(PANTHER)
Chla9g03706 123 SUPERFAMILY NTF2-like 4 121 IPR032710 -
Chla9g03706 123 ProSiteProfiles Nuclear transport factor 2 domain profile. 6 120 IPR018222 -
Chla9g03706 123 Pfam Nuclear transport factor 2 (NTF2) domain 7 120 IPR002075 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla9g03706 K14285 NTF2-related export protein 1/2
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Event-related genes

Select Gene_1 Gene_2 Event_name
42994 Chla7g03020 Chla9g03706
43156 Chla8g03101 Chla9g03706
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr9:55733293 Chla9g03706 Chla-Chr9:132392235 dispersed
Chla Chla-Chr7:132469175 Chla9g03706 Chla-Chr9:132392235 transposed
Chla Chla-Chr8:90931882 Chla9g03706 Chla-Chr9:132392235 wgd