AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla9g03711 ATGCCATCATTAATCCTAGAAGAACCACTTTTAACGCCAACCCAAGACAGATTCTGCATGTTCCCAATTCACTACCCTCAAATATGGGAAATGTACAAAAAAGCCCAAGCTTCATTCTGGACAGCAGAAGAAGTGGACTTATCAGCAGATATCCGTCACTGGGAGTCGTTAACTAACGGAGAACGTCATTTCATTACACACGTTCTCGCGTTTTTCGCGTCTTCTGATGGCATTGTGTTGGAGAATTTGGCTAGTAGGTTTATGAATGATGTCCAAGTAGCCGAAGCGAGGGCTTTTTACGGGTTTCAAATTGCGATAGAGAATATACATTCAGAGATGTATAGTTTGCTTTTGGAAACGTATGTTAAGGATGGGAAGGAGAAAGATAGGTTGTTTCGGGCAGTTGAGACAATTCCGTGTGTTGAGAAAAAGGCGAAGTGGGCGATGAAGTGGATTGATGGCTCGGAGTCGTTTGCTGAAAGGATTATTGCGTTTGCGTGTGTTGAAGGTATATTCTTTTCAGGAAGCTTTTGCGCGATATTTTGGTTAAAAAAGCGTGGCTTAATGCCAGGACTAACCTTCTCAAACGAGTTAATCTCACGAGACGAAGGCCTCCACTGCGATTTCGCATGCCTGCTCTACACTTTGCTAAACAACAAACTAACCGAAGAACGCGTAAAGTCCATAGTATCTGACGCAGTTGATATCGAACGTGAATTTGTATGTGACGCATTACCATGTGCACTAGTTGGCATGAATGGTGAACTCATGAGTACATATATCGAGTTTGTGGCTGATAGGTTGTTGGTGTCCTTAGGATTTAGCAAAATGTACAATGTTTCGAACCCGTTTGATTGGATGGAATTGATTTCGTTACAAGGGAAGACGAATTTTTTCGAGAAGCGAGTAGGGGAGTATCAAAAGGCTTCGATTATGTCGAATTTGAATGCAAATGGTGGTGATCAACATGTGTTCAAGATGGATGAAGATTTTTAA 996 41.87 MPSLILEEPLLTPTQDRFCMFPIHYPQIWEMYKKAQASFWTAEEVDLSADIRHWESLTNGERHFITHVLAFFASSDGIVLENLASRFMNDVQVAEARAFYGFQIAIENIHSEMYSLLLETYVKDGKEKDRLFRAVETIPCVEKKAKWAMKWIDGSESFAERIIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLNNKLTEERVKSIVSDAVDIEREFVCDALPCALVGMNGELMSTYIEFVADRLLVSLGFSKMYNVSNPFDWMELISLQGKTNFFEKRVGEYQKASIMSNLNANGGDQHVFKMDEDF 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla9g03711 331 PIRSF NrdB 7 317 IPR000358 GO:0009263(InterPro)
Chla9g03711 331 CDD RNRR2 18 292 IPR033909 GO:0009263(InterPro)
Chla9g03711 331 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 8 331 IPR000358 GO:0009263(InterPro)
Chla9g03711 331 Pfam Ribonucleotide reductase, small chain 17 283 IPR000358 GO:0009263(InterPro)
Chla9g03711 331 SUPERFAMILY Ferritin-like 5 308 IPR009078 -
Chla9g03711 331 Gene3D Ribonucleotide Reductase, subunit A 3 308 IPR012348 GO:0016491(InterPro)
Chla9g03711 331 ProSitePatterns Ribonucleotide reductase small subunit signature. 106 122 IPR030475 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla9g03711 K10808 ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
Chla9g03711 K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
43155 Chla8g03096 Chla9g03711
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr9:132943439 Chla7g06560 Chla-Chr7:279763459 dispersed
Chla Chla-Chr1:39226333 Chla9g03711 Chla-Chr9:132943439 transposed
Chla Chla-Chr1:163393603 Chla9g03711 Chla-Chr9:132943439 transposed
Chla Chla-Chr8:90878733 Chla9g03711 Chla-Chr9:132943439 wgd