AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chla9g03728 ATGGTACTAGGATTGAAGACGAGAAACAGGAACAGCCCGTACGTCCATCTTGATTACGTTATCAATCTAGTAGAGATTAAGCCGTGGCCTCCATCACAGTCGCTAAGATCAGTTCGGTCTGCATTGATTCAATGGGAGCATGGTGACAAGTTTTCAGGGTCTACTAAAGCAGTTGCGCCTTCAAATGCTTTTGGTTTGGGTGTAGGTGATGGTAAAATCGAGTTTAATGAGTCTTTCAAACTTCCTGTGACATTATCACGGGATATGTCAGTTAAGACTAGCAATAACGAATCTTTCTTAAGGAATTGTGTAGAGTTTAATATGTACGAACCACGTAGGGACAAAACGGTAAAAGGGCAGTTGTTGGCTACTGCAGTTATAGATTTTGCGGAGTATGGTATTTTTGACGATAGTTTGGTTATTTGTGTGCCTATGAATTGCAAGAGGATGTTTGGTAATACGGCTCAGCCTATGCTTTTTGTTGAAATCCAAATGGTTGAGAAGAATAACCGCATGAGGTGTTCATTTGGGGAGAGATTGATAAGGGAAGGATCGCTGGATAGGAATGTTTGTGCGTTGATGAATGCAGAGTATGCTGAGGAAGCTGACACTGCCTCCGTTACAGATAATAATGAGGATGATGATGTTTCCTCCCAGTCTTCCATGGATACTGGTTCTTCAGCGTCTGGTTCAAATGGGAATGTAACTCCTCAAAGTGAGAACGGGTCTGAAGCCATTTGTGGAAGCTCAGAAAAGGTCAATAGTCAAGAAGTCTCGGTTCAAAGTAAAAGGGCCATATTTGAAGAACGTATTTCATCATCAAAAGACTTATATTCTGAACTAGAAAATGCTCGTACCACTTTATCAAATATCCGTAACTCAAGATTCACAATGCTCCCACAAAAGACTGAATCATGTAGTAGCGTGAAACTATCAAAGCCGATTGGTAAGAATGACACTAGAAAAGTGATGGTCTATGAAGCGAACAATGGAAGTCAAATCATTGGAGATATTGGAACTGATGGTGATAGTAAAAGGAATGCGAAGCGACTTGATTCTTCAATGGATTCAGGAATAAGCATCGGGTCAGTTAGAACTAGCAAAGTATTAGAGAAATTTAAAAACGTCGGTATTTGTGACAAGAATTATGAGAAGAACTTAACAGTTAATGAGATAAGTGATGCAAGCAAAGTACAACACTTGGAACAAAGAATGAAACTTCTTGAAGGCGAACTACGAGAATCTGCAGCTATTGAGATTAGTCTTTACTCAGTAGTTGCAGAGCACGGAAGATCCACTAATAAAGTTCATGCCCCTGCTCGACGTCTTTCTAGGTTGTACCTTCATGCATGCAAAGATAATTCTTTCAGGAGAGCAAGTTCAGCAAAAAGTATTGTGTCAGGACTGATTTTAGTCGCAAAAGCTTGTGGAAATGATGTCCCAAGGTTGACTTTCTGGTTGTCAAATTCTGTTGTACTAAGAGCCATAATACATAAAAAATTTGACAAGGAGAAGGTATCTGGGATAGTTGAGAAAGGAAGTACCGAGAATTCTAATGAACGGGAGGACCCTTGTATGGTTATATCTTTGTTGGAAAAAGTAGAATCTTGGATCTTCATGCGCATTATTGAGTCCATCTGGTGGCAGACTCTTGCTCCTTATATGCAATCCACTGCTGCAAAGGGAATCCCTAGAGTTGTAGATTCAGGCTATAATAAAACCTGTCAAACAACATCTGGTTCACTTGAGCATGAGCGAGTCCACACCTCCTTGAAACTTTGGAAAACCGCTTTCATGGATGCTTGTGAAAGAATTTGTCCTGTTCGAGCTGCAGGACATGATTGCGGTTGCTTGAGTATCCTTTCTATGTTGATAATGGAGCAATGCATGGCTAGATTAGATGTAGCTATGTTCAATGCCATTCTTCGTCAGTCGGAAGATGAAGGTCCAACGGACCCTGTATCAGACCCCATCAGTGATGCTGGGGTTCTTCCTATTCCATCAGGGAAAGCAAGCTTTGGAGCCGGTGCACAACTGAAAACGACAATAGGAAACTGGTCCAGTTGGCTCACAGATCTATTTGGCTCACCTATCTCTTTTCATCTCCTTACTGCTCTGAGTGAGCTCATGATGCTTCCTAAGGATATGCTCTTAAGTAACACAGTCCGAAAAGAGGTGTGCCCTAATATTGGTGTAGCATTAATAAAGAGGATACTTGATAGATTCGTTCCGGATGAATTTTGCCCAGATGTGATTCCCGAGGTGGTTCTTGAATCACTAAACTCAAAGGATTTAATGGAGAGTGGCGAAGATTGTATTACAAGTCTCCCCTGTCGAGCAGCTCCTATTGTATATCAACCTCCTTCTGCATCTCTAATAGGATGCATCTTAGGAAATGATGGAAGCCGAGCTCATTTGTCACGCAGTGGATCATCAATCCTAAAAAAGTCAAATACAAGCGATGATGAACTCGATGAATTGGATTCACCTTTGACTTTAATAATTGACTCCTGTCAGCCTGTAGCTGCATCAACAAAACCTGTATGGGCATTGAAAGATGTCGGAAATGGCAATACTAGTATTAGGTATCAACTCCTTAGAGAGGTATGGATGAGTAGCGATTAG 2625 41.14 MVLGLKTRNRNSPYVHLDYVINLVEIKPWPPSQSLRSVRSALIQWEHGDKFSGSTKAVAPSNAFGLGVGDGKIEFNESFKLPVTLSRDMSVKTSNNESFLRNCVEFNMYEPRRDKTVKGQLLATAVIDFAEYGIFDDSLVICVPMNCKRMFGNTAQPMLFVEIQMVEKNNRMRCSFGERLIREGSLDRNVCALMNAEYAEEADTASVTDNNEDDDVSSQSSMDTGSSASGSNGNVTPQSENGSEAICGSSEKVNSQEVSVQSKRAIFEERISSSKDLYSELENARTTLSNIRNSRFTMLPQKTESCSSVKLSKPIGKNDTRKVMVYEANNGSQIIGDIGTDGDSKRNAKRLDSSMDSGISIGSVRTSKVLEKFKNVGICDKNYEKNLTVNEISDASKVQHLEQRMKLLEGELRESAAIEISLYSVVAEHGRSTNKVHAPARRLSRLYLHACKDNSFRRASSAKSIVSGLILVAKACGNDVPRLTFWLSNSVVLRAIIHKKFDKEKVSGIVEKGSTENSNEREDPCMVISLLEKVESWIFMRIIESIWWQTLAPYMQSTAAKGIPRVVDSGYNKTCQTTSGSLEHERVHTSLKLWKTAFMDACERICPVRAAGHDCGCLSILSMLIMEQCMARLDVAMFNAILRQSEDEGPTDPVSDPISDAGVLPIPSGKASFGAGAQLKTTIGNWSSWLTDLFGSPISFHLLTALSELMMLPKDMLLSNTVRKEVCPNIGVALIKRILDRFVPDEFCPDVIPEVVLESLNSKDLMESGEDCITSLPCRAAPIVYQPPSASLIGCILGNDGSRAHLSRSGSSILKKSNTSDDELDELDSPLTLIIDSCQPVAASTKPVWALKDVGNGNTSIRYQLLREVWMSSD 874
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chla9g03728 874 ProSiteProfiles C2 NT-type domain profile. 7 167 IPR019448 -
Chla9g03728 874 MobiDBLite consensus disorder prediction 202 260 - -
Chla9g03728 874 Coils Coil 398 418 - -
Chla9g03728 874 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 12 872 IPR021827 GO:0005643(InterPro)
Chla9g03728 874 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 18 167 IPR019448 -
Chla9g03728 874 MobiDBLite consensus disorder prediction 211 260 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chla9g03728 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
42988 Chla7g03001 Chla9g03728
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chla Chla-Chr7:131729449 Chla9g03728 Chla-Chr9:133946596 dispersed
Chla Chla-Chr9:48375883 Chla9g03728 Chla-Chr9:133946596 dispersed
Chla Chla-Chr9:48496405 Chla9g03728 Chla-Chr9:133946596 dispersed