AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma3g03605 ATGGCTGTTGTTGGTTCTTTCAACCTGCTGACTGTTAAATCTTCACCACTATGTTTCGGGTATCATATATCAAGTTGCAACAAGCCTTTATTTACTACTAATAAGTTTGGATCATTTAAGAAAAATCGTATTCAGATATCTGTTTGTAAATCATCATCAGCAACTTCTTCTACTTCTGCTTCTTTGTTGTCGTTTCGTGATCTAGATGCTGATGACTTTAGACATCCTCTTGACAAGCAGAATACGCTGCTTTTGAGGGCAATTCCGGGCCTAAACGAGATTGGCAAGGCTTTGTTAGGGAGCATAGCAGAGCAGGTGATGGTACTTGAAAATATAGGAACCTCCGTTCTAGTATCCGAAAATCAGCTTTCAGAACTTCATCAGTTAATGGTTCAGTCAGCAGAAGCACTGAAAATTGAAGCTCCTGACCTGTATGTGCGCCAAAGTCCAGTACCTAATGCATATACTTTAGCCATTAACGGTAAAAAGCCATTTGTTGTTGTTCATACAAGCCTTATAGAGCTTCTTACAAGAAAGGAGTTGCAGGCTGTTTTGGCTCATGAGTTAGGACACCTTAAATGTGATCATGGTGTATGGCTGACAGTAGCAAATATACTGACCGTTGGAGCATACACTATACCCGGGATTGGAGGTATGATAGCCCAGAACTTAGAAGAACAACTATTCCGTTGGCTCCGAGCTGCAGAGCTTACCTGTGATCGGGCTGCCCTTCTTGTAGTCCAAGATCCCAAGGTGGTCATATCTGTTCTGATGAAACTTGCTGGAGGAAGCCCTTCTTTGGCCGATCAACTAAATGTGGATGCTTTTCTTGAACAAGCTCGATCTTATGACAGAGCATCTGCAAGCCCTGTTGGCTGGTATATAAGAAATGCACAAACGAGACAACTTTCCCATCCTCTTCCTGTACTGAGAGCGCGTGAAATTGATGAGTGGTCAAGAAGTCCAGATTATAAATCTCTTATGAAACGCGCAGTTAATCAAATACCGTCAAATACTTATAAGTTTGTTAAGCCGTGGATGCTTTCACTCTGGTGTTGTTTGGATAAGCTTTCATCTAGTACAAATCTAGCAATTACACCTGGTTCCGAAGACAATGTCACCACTTTACCAGTTATATGGTTACACGAGTAG 1152 41.67 MAVVGSFNLLTVKSSPLCFGYHISSCNKPLFTTNKFGSFKKNRIQISVCKSSSATSSTSASLLSFRDLDADDFRHPLDKQNTLLLRAIPGLNEIGKALLGSIAEQVMVLENIGTSVLVSENQLSELHQLMVQSAEALKIEAPDLYVRQSPVPNAYTLAINGKKPFVVVHTSLIELLTRKELQAVLAHELGHLKCDHGVWLTVANILTVGAYTIPGIGGMIAQNLEEQLFRWLRAAELTCDRAALLVVQDPKVVISVLMKLAGGSPSLADQLNVDAFLEQARSYDRASASPVGWYIRNAQTRQLSHPLPVLRAREIDEWSRSPDYKSLMKRAVNQIPSNTYKFVKPWMLSLWCCLDKLSSSTNLAITPGSEDNVTTLPVIWLHE 383
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma3g03605 383 CDD M48-Ste24p-like 112 317 - -
Chma3g03605 383 PANTHER CAAX PRENYL PROTEASE 1 58 324 - GO:0004222(PANTHER)|GO:0030176(PANTHER)|GO:0071586(PANTHER)
Chma3g03605 383 Pfam Peptidase family M48 124 318 IPR001915 GO:0004222(InterPro)|GO:0006508(InterPro)
Chma3g03605 383 Gene3D Metalloproteases (zincins), catalytic domain 117 204 - -
Chma3g03605 383 FunFam Peptidase M48 family protein 116 204 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma3g03605 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr3:149550848 Chma9g08184 Chma-Chr9:280877702 dispersed