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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma3g03606 ATGGAAAACGACTTCGATCGACTTCTCTTCTTCGAACACGCTCGCCGTACTGCCGAACTCACTTACACCAAAAACCCACTCGATACCGAGAATTTAACTAGATGGGCAGGCGCGTTGCTCGAATTATCCACTTTTCAATCTGTTCAGGATTCTAAACTTATGATCAAAGCTGCGATATCGAAATTGGATGAAGCGTTAAAGATTGATCCGAGGAAACATGATACGTTGTGGTGTATGGGAAATGCCCAAACTTCTTATGCTTTTTTGACTCGTGAGGAGGACGAAGCTAAGGGTTATTTTGATTCGGCGTATGTTTACTTTCAGCAGGCTGTTGAAGAGGATCCGGGGAACACGCTTTACCGCAAGTCATTGGAAGTGGCTGTAAAGGCTCCTGAATTACATGCTGAGCTCCATAAACAGGGATCTATTCAACAAGCTATGGGACCAGTGGCAGGAGGTGGTCCTTCCACCTCTTCTAGTATCAAGGGTCCGAAGACACAAAAAAACAGCGATCTGACATATGATATACTTGGGTGGGCTATTCTTGCTGTTACTATTGTGGCATGGGTTGGATTCGCCAAAGCAAATGTACCTCCACCACCTTCTCGATAA 612 45.1 MENDFDRLLFFEHARRTAELTYTKNPLDTENLTRWAGALLELSTFQSVQDSKLMIKAAISKLDEALKIDPRKHDTLWCMGNAQTSYAFLTREEDEAKGYFDSAYVYFQQAVEEDPGNTLYRKSLEVAVKAPELHAELHKQGSIQQAMGPVAGGGPSTSSSIKGPKTQKNSDLTYDILGWAILAVTIVAWVGFAKANVPPPPSR 203
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma3g03606 203 MobiDBLite consensus disorder prediction 145 167 - -
Chma3g03606 203 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 2 202 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Chma3g03606 203 MobiDBLite consensus disorder prediction 151 167 - -
Chma3g03606 203 SUPERFAMILY TPR-like 11 126 IPR011990 GO:0005515(InterPro)
Chma3g03606 203 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515(InterPro)
Chma3g03606 203 Pfam Plant specific mitochondrial import receptor subunit TOM20 5 194 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma3g03606 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr3:149559754 Chma9g01208 Chma-Chr9:24498584 dispersed
Chma Chma-Chr1:99283536 Chma3g03606 Chma-Chr3:149559754 transposed
Chma Chma-Chr2:160578858 Chma3g03606 Chma-Chr3:149559754 transposed
Chma Chma-Chr3:210488989 Chma3g03606 Chma-Chr3:149559754 transposed
Chma Chma-Chr2:160577882 Chma3g03606 Chma-Chr3:149559754 wgd