Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chma3g03703 | ATGGCTGTTAAGGCTGCTATACATGTTACAGACGTGTCACATTTGGATCAAGTTAATGAGGGTGCCGCTTCTTTGTCCTCGCTTTATGCTACACGTCTGCCTAATGGATTGGATGTGAGCAATGGGCAAAAAAGTTTGCCTAAATTCATGGTGGTGGGTCACCGTGGTCATGGCATGAATGTTTTGCAGTCAACGGATAAGAGAATGAAAGCTTATAAGGAAAACTCTATTACTTCGTTCAATAATGCTGCTAATCATGCCCTTGATTACATTGAATTTGACGTTCAGGTGACAAAAGACAACGTTCCAATCATTTTCCACGACAACTTCATCGTCTCTGCAGAGAATGGTAAAGTAGTTGAAAAGAGAGTGACCGATTTGACTGTTGATGAATTCTTTAGCTACGGTCCTCAAAGAACATCCGGCCAAGTGGGAAAATCTTTGCTTAGGCAGATCAATGGAAACATTGTCGGGTGGGACGTTGAGGTCGATGATCATTCTTGTACTCTTGAAGAAGCATTCCAAAAAGTCAACCCTTGTTTGGGATTCAACATTGAGTTGAAATTTGACGATTATGTTGTTTACGAAGAAGAGTATATCAATCATGTTCTTCAAGTCATCTTGAAAGTGGTATATGAAAACGCCCAAGAAAGACCTGTTCTATTTTCAACCTTTCAACCTGATGTGGCTTTGCTAATGAAGAAACTTCAGCACACTTACCCGGTGTACTTCTTGACAAATGGAGGAAACGAGATATATGATGATGTGCGAATGAACTCATTAGAAGAAGCCAAGAAGCTTGCCATTGGAGGTGGTTTGGATGGAATTGTTTCAGAAGTAAAGGGTATTTTTAGAAACCCTTCAGTAGTACGAGAGATTAAAGAATCAAATCTCTCACTCCTTACTTACGGAAAACTAAATAATGTCCCTGAAGCCGTGCATGTTCAATATCTTATGGGTGTCGAAGGTGTGATTGTTGACTTGGTACAAGAAATTACGAGTGCAGTCAAAGCTTATAACAGCAACAAGACTGTAACAGAAGGGGAGGAAGAAGGATTAAAGGTGATGGACAACACCATCTACAATGGCTCATCGAAAGTCTTGAACCCTGGTTTGGGCATTGTGAAAGTCTTGCTTCTACTTATGAAAGTCTTCCAACAGCATTCGAATGGTGAAGACTATGAAGGTGGGCATGATATAGATAGGTTTATGACATTCATCGACGGGAAGTGTGGTACTACCAGGCGTGATGCAAAAGGAAAACTTACCTCTATTGCTCGTTTGATTGCAGAATTAGATAGCTTGGTGAAGGAGTTTGTAAGTTCCGGTAAGGATGAAAAGAAAGCAGTGTATGCTAAGATTGAGGGAGGAGGAACATGA | 1380 | 40.72 | MAVKAAIHVTDVSHLDQVNEGAASLSSLYATRLPNGLDVSNGQKSLPKFMVVGHRGHGMNVLQSTDKRMKAYKENSITSFNNAANHALDYIEFDVQVTKDNVPIIFHDNFIVSAENGKVVEKRVTDLTVDEFFSYGPQRTSGQVGKSLLRQINGNIVGWDVEVDDHSCTLEEAFQKVNPCLGFNIELKFDDYVVYEEEYINHVLQVILKVVYENAQERPVLFSTFQPDVALLMKKLQHTYPVYFLTNGGNEIYDDVRMNSLEEAKKLAIGGGLDGIVSEVKGIFRNPSVVREIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITSAVKAYNSNKTVTEGEEEGLKVMDNTIYNGSSKVLNPGLGIVKVLLLLMKVFQQHSNGEDYEGGHDIDRFMTFIDGKCGTTRRDAKGKLTSIARLIAELDSLVKEFVSSGKDEKKAVYAKIEGGGT | 459 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chma3g03703 | 459 | Pfam | Glycerophosphoryl diester phosphodiesterase family | 54 | 329 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Chma3g03703 | 459 | ProSiteProfiles | GP-PDE domain profile. | 49 | 336 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Chma3g03703 | 459 | PANTHER | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE | 40 | 345 | IPR051578 | GO:0046475(PANTHER) | |
| Chma3g03703 | 459 | FunFam | Glycerophosphodiester phosphodiesterase GDPD2 | 40 | 338 | - | - | |
| Chma3g03703 | 459 | Gene3D | Phosphatidylinositol (PI) phosphodiesterase | 39 | 337 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Chma3g03703 | 459 | SUPERFAMILY | PLC-like phosphodiesterases | 47 | 330 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chma3g03703 | K18696 | glycerophosphodiester phosphodiesterase [EC:3.1.4.46] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chma | Chma-Chr2:158617833 | Chma3g03703 | Chma-Chr3:153910392 | dispersed | |
| Chma | Chma-Chr3:153910392 | Chma5g05395 | Chma-Chr5:190503001 | dispersed |