AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma3g03703 ATGGCTGTTAAGGCTGCTATACATGTTACAGACGTGTCACATTTGGATCAAGTTAATGAGGGTGCCGCTTCTTTGTCCTCGCTTTATGCTACACGTCTGCCTAATGGATTGGATGTGAGCAATGGGCAAAAAAGTTTGCCTAAATTCATGGTGGTGGGTCACCGTGGTCATGGCATGAATGTTTTGCAGTCAACGGATAAGAGAATGAAAGCTTATAAGGAAAACTCTATTACTTCGTTCAATAATGCTGCTAATCATGCCCTTGATTACATTGAATTTGACGTTCAGGTGACAAAAGACAACGTTCCAATCATTTTCCACGACAACTTCATCGTCTCTGCAGAGAATGGTAAAGTAGTTGAAAAGAGAGTGACCGATTTGACTGTTGATGAATTCTTTAGCTACGGTCCTCAAAGAACATCCGGCCAAGTGGGAAAATCTTTGCTTAGGCAGATCAATGGAAACATTGTCGGGTGGGACGTTGAGGTCGATGATCATTCTTGTACTCTTGAAGAAGCATTCCAAAAAGTCAACCCTTGTTTGGGATTCAACATTGAGTTGAAATTTGACGATTATGTTGTTTACGAAGAAGAGTATATCAATCATGTTCTTCAAGTCATCTTGAAAGTGGTATATGAAAACGCCCAAGAAAGACCTGTTCTATTTTCAACCTTTCAACCTGATGTGGCTTTGCTAATGAAGAAACTTCAGCACACTTACCCGGTGTACTTCTTGACAAATGGAGGAAACGAGATATATGATGATGTGCGAATGAACTCATTAGAAGAAGCCAAGAAGCTTGCCATTGGAGGTGGTTTGGATGGAATTGTTTCAGAAGTAAAGGGTATTTTTAGAAACCCTTCAGTAGTACGAGAGATTAAAGAATCAAATCTCTCACTCCTTACTTACGGAAAACTAAATAATGTCCCTGAAGCCGTGCATGTTCAATATCTTATGGGTGTCGAAGGTGTGATTGTTGACTTGGTACAAGAAATTACGAGTGCAGTCAAAGCTTATAACAGCAACAAGACTGTAACAGAAGGGGAGGAAGAAGGATTAAAGGTGATGGACAACACCATCTACAATGGCTCATCGAAAGTCTTGAACCCTGGTTTGGGCATTGTGAAAGTCTTGCTTCTACTTATGAAAGTCTTCCAACAGCATTCGAATGGTGAAGACTATGAAGGTGGGCATGATATAGATAGGTTTATGACATTCATCGACGGGAAGTGTGGTACTACCAGGCGTGATGCAAAAGGAAAACTTACCTCTATTGCTCGTTTGATTGCAGAATTAGATAGCTTGGTGAAGGAGTTTGTAAGTTCCGGTAAGGATGAAAAGAAAGCAGTGTATGCTAAGATTGAGGGAGGAGGAACATGA 1380 40.72 MAVKAAIHVTDVSHLDQVNEGAASLSSLYATRLPNGLDVSNGQKSLPKFMVVGHRGHGMNVLQSTDKRMKAYKENSITSFNNAANHALDYIEFDVQVTKDNVPIIFHDNFIVSAENGKVVEKRVTDLTVDEFFSYGPQRTSGQVGKSLLRQINGNIVGWDVEVDDHSCTLEEAFQKVNPCLGFNIELKFDDYVVYEEEYINHVLQVILKVVYENAQERPVLFSTFQPDVALLMKKLQHTYPVYFLTNGGNEIYDDVRMNSLEEAKKLAIGGGLDGIVSEVKGIFRNPSVVREIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITSAVKAYNSNKTVTEGEEEGLKVMDNTIYNGSSKVLNPGLGIVKVLLLLMKVFQQHSNGEDYEGGHDIDRFMTFIDGKCGTTRRDAKGKLTSIARLIAELDSLVKEFVSSGKDEKKAVYAKIEGGGT 459
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma3g03703 459 Pfam Glycerophosphoryl diester phosphodiesterase family 54 329 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Chma3g03703 459 ProSiteProfiles GP-PDE domain profile. 49 336 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Chma3g03703 459 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 40 345 IPR051578 GO:0046475(PANTHER)
Chma3g03703 459 FunFam Glycerophosphodiester phosphodiesterase GDPD2 40 338 - -
Chma3g03703 459 Gene3D Phosphatidylinositol (PI) phosphodiesterase 39 337 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Chma3g03703 459 SUPERFAMILY PLC-like phosphodiesterases 47 330 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma3g03703 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr2:158617833 Chma3g03703 Chma-Chr3:153910392 dispersed
Chma Chma-Chr3:153910392 Chma5g05395 Chma-Chr5:190503001 dispersed