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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma3g03712 ATGTCATCAACAGTATGTGATTTCTGCAACAATAGGCCAGCTGTCCTATACTGTAAAGCTGACTCAGCTAAGCTTTGTTTATTCTGTGATAACGCTGTTCATTCAGCTAACGCTTTATCACTTAAACATATCAGATCACAGATCTGTTACAACTGTTGTGACGATGCTGCTCACGTTAGCTGCTTGACTGAGAATCTGCTATTGTGCGCCTCTTGTGATGGTGACTTTCACGGTGATTCTTCCGCGTCATCGTATCATGAGCGTTGTAGTGTTGGCGAGATTATCGGGTGTCCTTCGGTTATCGAATTGGCGAAAAACTTGGGGTTTGATGTGAATAAGGTGCTGAAAAATGAGAGTTTTGGTGGGAATGAAGGTTTTAAGGATTTTGATGCTTTGTTTATGTTGGATGAGGGGAATAGTGGTGGTGGATGTTATGATGACGTGGATGAGGTTCCGAAAGTTGAGTGGGGAGTGAAAACTGGTGGATCTGGTAACGGTGTGAGGAATAAGGTGTTGTATAAGCAGTTATTAGAGTTTGCAAAGGAGAGAGGTGAGGGGGAAGGGGGAGGGAGTGAATTGGGGCCGAATACGCCGAGTGAGTGTGGACGGGTGGATGTGGAGTATGGGGAGGAGGATGAGAAGGAGATGGAGATGTTGAAGCAGGAGATTCCACTGACGTATTTGCTTATGTCGAGAGAGGATCGGGATATTGAGAATTTGAAAGGGGGTACTGGGTGTGGGAGTAGTGAGTTTGGTAATATGTGGAGTTATAGTCCTAAACGCGAAACTAGTCAGATATGGGATTTTAATCTAGGAAGATCAAGAACTTGTGAGGCAGGACGTGATAATCCTGGATTTGCGATAAACAACTGTACCGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTGCTAAAAGAAATGGATGCCATAAATATATCTTTTGGCACTCCGTCACAAAAT 966 44.0 MSSTVCDFCNNRPAVLYCKADSAKLCLFCDNAVHSANALSLKHIRSQICYNCCDDAAHVSCLTENLLLCASCDGDFHGDSSASSYHERCSVGEIIGCPSVIELAKNLGFDVNKVLKNESFGGNEGFKDFDALFMLDEGNSGGGCYDDVDEVPKVEWGVKTGGSGNGVRNKVLYKQLLEFAKERGEGEGGGSELGPNTPSECGRVDVEYGEEDEKEMEMLKQEIPLTYLLMSREDRDIENLKGGTGCGSSEFGNMWSYSPKRETSQIWDFNLGRSRTCEAGRDNPGFAINNCTDLVEDASFTTMEVLKEMDAINISFGTPSQN 322
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma3g03712 322 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Chma3g03712 322 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Chma3g03712 322 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270(InterPro)
Chma3g03712 322 CDD Bbox1-BBX-like 5 48 IPR049808 -
Chma3g03712 322 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 274 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma3g03712 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr3:154140857 Chma8g01409 Chma-Chr8:75154860 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chma5g03931 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 51.2 1.85e-116 341.0
Chma9g08127 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 39.535 5.88e-11 58.9
Chma2g00753 . 272 361 C2C2-CO-like Transcription Factor family AT3G07650 60.0 5.24e-27 103.0
Chma1g02861 ACH 161 333 C2C2-CO-like Transcription Factor family AT5G15850 31.034 7.31e-13 67.0
Chma7g08687 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 54.5 1.56e-63 197.0
Chma9g03951 . 10 328 C2C2-CO-like Transcription Factor family AT2G47890 46.429 1.40e-93 281.0
Chma8g02781 . 4 105 C2C2-CO-like Transcription Factor family AT5G54470 50.485 3.31e-28 103.0
Chma6g05753 . 274 344 C2C2-CO-like Transcription Factor family AT5G48250 49.296 2.57e-08 50.8
Chma2g06925 . 305 388 C2C2-CO-like Transcription Factor family AT5G24930 38.095 2.51e-10 55.1
Chma6g02004 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.804 3.01e-94 279.0
Chma8g02779 ACH 4 105 C2C2-CO-like Transcription Factor family AT5G54470 51.456 3.30e-29 106.0
Chma5g06585 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.933 3.46e-132 380.0
Chma8g02864 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 60.094 2.63e-84 246.0
Chma5g06792 . 1 217 C2C2-CO-like Transcription Factor family AT1G75540 51.802 6.86e-67 209.0
Chma4g07165 . 1 322 C2C2-CO-like Transcription Factor family AT1G75540 41.791 5.59e-68 213.0
Chma5g01294 . 315 386 C2C2-CO-like Transcription Factor family AT5G24930 45.205 4.16e-12 65.5
Chma7g08017 . 1 298 C2C2-CO-like Transcription Factor family AT1G78600 50.325 5.98e-82 247.0
Chma3g03712 . 8 286 C2C2-CO-like Transcription Factor family AT2G33500 36.825 1.82e-44 155.0
Chma5g03933 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.933 5.90e-115 337.0
Chma5g07901 . 285 399 C2C2-CO-like Transcription Factor family AT1G68520 45.69 5.08e-21 92.4
Chma5g06837 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.962 2.88e-92 274.0
Chma3g05031 ACH 6 97 C2C2-CO-like Transcription Factor family AT5G54470 56.989 1.19e-31 112.0
Chma6g11055 . 334 388 C2C2-CO-like Transcription Factor family AT5G24930 47.273 4.91e-11 62.0
Chma2g07278 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 2.33e-10 58.5
Chma6g01829 ACH 1 334 C2C2-CO-like Transcription Factor family AT5G48250 48.851 7.10e-97 289.0
Chma8g10673 . 5 221 C2C2-CO-like Transcription Factor family AT3G21150 29.741 4.83e-18 77.8
Chma0g02373 . 7 355 C2C2-CO-like Transcription Factor family AT5G57660 47.09 1.89e-93 282.0
Chma6g00504 . 1 107 C2C2-CO-like Transcription Factor family AT4G27310 52.336 2.52e-30 110.0
Chma6g06426 ACH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 52.174 1.22e-10 60.1
Chma8g06611 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.21 2.61e-76 235.0
Chma3g03528 . 278 399 C2C2-CO-like Transcription Factor family AT1G68520 40.278 8.32e-23 95.5
Chma3g03711 . 320 371 C2C2-CO-like Transcription Factor family AT2G33500 48.077 1.49e-06 42.4
Chma8g00868 . 76 217 C2C2-CO-like Transcription Factor family AT1G68190 26.705 2.72e-07 48.1
Chma9g08588 . 282 401 C2C2-CO-like Transcription Factor family AT1G68520 37.5 2.80e-16 74.3
Chma7g08386 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.155 4.05e-129 374.0
Chma6g08917 . 206 299 C2C2-CO-like Transcription Factor family AT1G78600 44.34 2.62e-11 57.4
Chma6g04982 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 52.083 8.58e-10 57.0
Chma8g06610 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.076 1.16e-70 220.0
Chma4g05200 . 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.073 2.73e-118 345.0
Chma4g02700 ACH 286 331 C2C2-CO-like Transcription Factor family AT5G15850 52.174 1.95e-09 55.1
Chma5g02271 . 264 344 C2C2-CO-like Transcription Factor family AT3G07650 56.79 1.76e-23 94.4
Chma5g06794 . 1 217 C2C2-CO-like Transcription Factor family AT1G75540 45.495 3.77e-53 173.0
Chma8g06532 . 73 319 C2C2-CO-like Transcription Factor family AT3G02380 27.74 1.71e-16 77.0
Chma7g07222 . 208 319 C2C2-CO-like Transcription Factor family AT3G02380 36.667 7.51e-10 56.2
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chma zf-B_box 2.6e-06 CL0782 TR Others