AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma3g03760 ATGGCGGCGGATCAGCTGAATAAGCGTTCTAAAGGAAGCAACGTTACCCATCACACTTCTTGGGAGCTGCAGAAAACGAAGAAGGCAAAATTTTCTCATTATGAGTTAAATACAAGATCAAGTATTTCTCTCGAGTGGGATGACAAGAAGAAACATGTTGTTCCAAAGAAGGAGCAGATAAGTATTGCTCGTAGAGAGTTGAAACCGTTTCTTCCTCATGTTCCACATCACCAGAATGTCTTGGGTGATGTCTTTGCAGCTCCTTCTGAGCTATTTGAACTGAATGACTTGACTGGTTTGCTGTCGTATGAGGTTTGGCAAACTCAATTGTCTGTACAAGAAAGAGAGTTTCTGACCCAGTTTCTTCCAGAAGGAGCTGACCCACATACCGTTGTTGATGACTTGTTATCTGGGAGCAATTTTTGCTTCGGAAGTCCATTCCAAAAATGGGGTACTTCAGTTTGTTCCGGTGATTGTCATCCTGATGCTGTTCTTCGTCAAGAACAGTGTAACAAGGCTAACAAAATAGCATATTATAAGGAATTGCAAGAGTATCATACCAAAATGTTAGGGAGTCTGCAATTGTGGAAGGAAACATGGGCATGCTGTGTGAATCCGGAAAATGACTTTAGCCAACAGATACCGAGGCCCATGAATGAATATGACAAAAATGGCTCCTCACATCAGAAAGACATACATGGTAGTCCTGAAGATGATGTGGGTGCAACATCTGATTCTGGTTATTTCGATGCTGAAGATAAGTCATATAGTAGCAATAGCCCGGATGTAGCAGTCATGAACGGAAAAACTTCAACAAGGGTCTCGAAAATGGAATCAGAGAACAATTATTTTGACTCTTCAGTTGGATCGAAATCGGTAGCAAGATCTAGAAAAGGAGATAAATTACGCAGGCTCAGTGTAGAGTGTGGTGATGGTGCCAAATATATGTCATATATCAAGGTTAGCAAAGTTCAGCATGAACAAGTTAAAAGCAGTATGAAACACTCTAACACCAGCATCCAGCAGAGGTCTCTGAGTCACGTTTTAGGCAATCTTGATAGTTTCTGTGTTATACCTTATGAAGTGTTTGAAGAAGAAGAGAGACTGAAGCTGCACGAACACTGGTCTAATTTGGCAAAGAAAGATCTCCCTGCAGGCTTTGCAAATTGGAATAGTTGGCGATCTGCCAGGTGGCAGTTAGGAATATCGTTAAGGAAAGAAATGGAAGATAGAGTGAAGTCAAATGATCAACCAGTTTCAAATTTTTGTAACCAGGATGAGGAGTTAAAATATGGTGATGTTCAGGACAACATGGAACAAAACGGCGATGCAGTGCTCAATTCAGATGCGAATCTTAATGCAGAAAACCATGAAACAGCAATGGAAGTTGAACCAAATGATCAGCCTAATCAATGCTCGCGTCAGAATCAGCATCTACCACAGATTAATGTAATACATAATGATGGCCAAAACTTCTGCTCCATGCCCATGGATGCTGCAAATGATGATGTATTGATCCAGTCAAGTGCTTTTCCTTCTAGTCTATGTGAATATCCCGCAAGTATAAATCGTGCAGATGCATCAGTTGCTGAACAAATATGGCCTGAAGTTAGCTTACCACAAAGTGTATACTATCACCATCCGACATCTATAAGTGTAAGCGATGGATACGCTTCTGTTGGTGAATTGTCACTAGGCCATTTGAGGCAACCAATTGTTCTAGAATCCGAGTTACTACAAAAGGATCCTCTTAGAAGTTTTATGCACAAAGGATCTGATGGTGGTGATTCTTTCTTTAATCCATATGCTAATCAAGACCGTAACGAATTACTACTCCAATCACTTTATAAAGATCCCGGGAATTCTCATTATCTTCATGAACAGAAGCTTTCTAGTTTATCTTTCCACCCAACCGTGAGTGACCCGATGCTGGGAACCAATCAATTTCCTAGAAATTTGTGCCCATCGATGCTAATGGATCCTGTGCTTCCGACCATTCAAGAAAACTTATATTCAATTCCAAGGCAAGAACACTTGTTGCCAATGAATAACGTTCACGATTGGCCCGGGCATGGTGGTATTAACCTTCCCATGACATCATCATCCCATCATCGCTTAAATCAAAATTGGTATCATGCTGATGAGGTGGTGCACAATGGGTGGTCTGGCGGTGTAGTACCGAACCAGGACCTTCTGAATAGTGCTCAGGTAGTTGACGAGAGCTTATTTAGCGTTTTAGCTCAGCATAATGGGGCCCATATTGGTTCAACCGGTGCAATGCAACAGTTTATTCCTTCTGGGAATTATGTCGGAGTTGGGGTTGGGCTTGGTGCAGTTGCGCCTACATTTACTGCTGTACCTCCTCGGACCGGCACAGGGTCAGGTTTCAACTACATGAGTGGCAATGAAGCACAGTTAGGATGGATGAACTTACCACATGCATTGCAGGGGACCGGTAAATCGTTTCCAAGACTATGGTATGACAAAGATATAGGACGGTGA 2502 42.09 MAADQLNKRSKGSNVTHHTSWELQKTKKAKFSHYELNTRSSISLEWDDKKKHVVPKKEQISIARRELKPFLPHVPHHQNVLGDVFAAPSELFELNDLTGLLSYEVWQTQLSVQEREFLTQFLPEGADPHTVVDDLLSGSNFCFGSPFQKWGTSVCSGDCHPDAVLRQEQCNKANKIAYYKELQEYHTKMLGSLQLWKETWACCVNPENDFSQQIPRPMNEYDKNGSSHQKDIHGSPEDDVGATSDSGYFDAEDKSYSSNSPDVAVMNGKTSTRVSKMESENNYFDSSVGSKSVARSRKGDKLRRLSVECGDGAKYMSYIKVSKVQHEQVKSSMKHSNTSIQQRSLSHVLGNLDSFCVIPYEVFEEEERLKLHEHWSNLAKKDLPAGFANWNSWRSARWQLGISLRKEMEDRVKSNDQPVSNFCNQDEELKYGDVQDNMEQNGDAVLNSDANLNAENHETAMEVEPNDQPNQCSRQNQHLPQINVIHNDGQNFCSMPMDAANDDVLIQSSAFPSSLCEYPASINRADASVAEQIWPEVSLPQSVYYHHPTSISVSDGYASVGELSLGHLRQPIVLESELLQKDPLRSFMHKGSDGGDSFFNPYANQDRNELLLQSLYKDPGNSHYLHEQKLSSLSFHPTVSDPMLGTNQFPRNLCPSMLMDPVLPTIQENLYSIPRQEHLLPMNNVHDWPGHGGINLPMTSSSHHRLNQNWYHADEVVHNGWSGGVVPNQDLLNSAQVVDESLFSVLAQHNGAHIGSTGAMQQFIPSGNYVGVGVGLGAVAPTFTAVPPRTGTGSGFNYMSGNEAQLGWMNLPHALQGTGKSFPRLWYDKDIGR 833
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma3g03760 833 MobiDBLite consensus disorder prediction 211 266 - -
Chma3g03760 833 MobiDBLite consensus disorder prediction 250 266 - -
Chma3g03760 833 MobiDBLite consensus disorder prediction 223 238 - -
Chma3g03760 833 PANTHER NFRKB-RELATED 1 476 IPR024867 GO:0031011(InterPro)
Chma3g03760 833 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 88 199 IPR044867 -
Chma3g03760 833 CDD DEUBAD-NFRKB 90 196 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma3g03760 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr3:155293079 Chma3g03760 Chma-Chr3:155379431 proximal