AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma3g03761 ATGGCTACTGGTATAAAATATAATCACGACAGGGAAATCATTCGATTAGAACCTGAAGCCGTTATTCCAATTTTGAAGCCTAGGCTCATCATGACATTGGCCAACCTCATTGAGCACAGTGCTGACCGCGGAGAGTTCTTGAAACTATGCAAAAGAGTGGAGTACACGATTCGGGCATGGTATCTTCTTCAGTTTGAAGATCTTATGCAACTATATGCACTTTTTGACCCCGTCTACGGGGCTCAAAAATTGGAGCAGCAGAAGTTATCGCCCCAAGAAGTTGATGTTCTTGAACAGAATTTCCTTAACTACATGTTTAAGGTACTAGAAAAGAGTAATTTTAAGATTGCAACAAATGAGGAAATTGCGGTTGCACAAGCAGGGCAGTATCTTCTAAATCTTCCTATCTCGGTGGATGAATCAAAACTTGATAAAAGTTTATTAACAAGGTACTTTAAGGAACATCCTCAAGAAAACCTTCCCGACTTTGCAGATAAGTATATAATCTTTAGACGTGGTATTGGAATTGATCGGACAACTGATTACTTTATCATGGAAAAGATTGACATGATTATTGCACGTATATGGTCATGGATCATGAGAGTAACTAGGCTAGAAAAGTTTTTTCCCAAAAAATCAAGTCCACTAATCAAGAAAGATATAACGAAAGAAGATGAAATCACGGATGAAGAGTTAAAAGATGAGTTGTATGTTGAGAGGATCCGAATAGAAAACTTAGAGCTGAGTTTAGAGAAGTTGGCAAATAAGATAACAATACAAGAACCAACATTTGACAGGATAATTGTCGTTTACAGGCTAGCAGGCACCAAGACAAAAAAGGAACGAGGAATATATGTTAAGCATCTTAAACAAATTCCAATGGCGGACATGGAAATAGTACTCCCAGAGAAGAAAAATCCAACTTTAACCCCTATGGATTGGTTGAAGTTCCTTTCTACTGCTATTTTCGGGCTGGCAGCTGTGACTGGTTCATTTGAGACGGCTAAAGCTGACTTTTGGGTCATTGTTGCCATTGTCTCAACGGTAGTTGGTTACTGTGCCAAAGTATACTTTACGTTTCAGGCAAACATGGAAACTTATCAGAACTTGATAACACAATTCATGTATGACAAACAACTCGATAGTGGAAAAGGCACTCTTCTTCACTTGTGCGATGATGTCATTCAACAAGAAGTGAAAGAGGTTATCATTTCTTTTTTCATATTGATGGAACAAGGAAAAGCAACTTTAAAGGAACTCGACCAAAAATGTGAAGAACTGCTAAGAGAAGAGTTTGGTGAAAGATGCAACTTTGATGTGGATGATGCGGTCAACAAATTGGAAAAACTGGGCATTATTGCTAAGGATCAAATAGGAAGGTATTACACTACTGGTCTTAAACGTGCAAATGAGATTATTGGCACCACTACAGAAGAGCTGGTACTTAAGGCACGCCAGGAGGGTGGTCCTTAA 1473 38.63 MATGIKYNHDREIIRLEPEAVIPILKPRLIMTLANLIEHSADRGEFLKLCKRVEYTIRAWYLLQFEDLMQLYALFDPVYGAQKLEQQKLSPQEVDVLEQNFLNYMFKVLEKSNFKIATNEEIAVAQAGQYLLNLPISVDESKLDKSLLTRYFKEHPQENLPDFADKYIIFRRGIGIDRTTDYFIMEKIDMIIARIWSWIMRVTRLEKFFPKKSSPLIKKDITKEDEITDEELKDELYVERIRIENLELSLEKLANKITIQEPTFDRIIVVYRLAGTKTKKERGIYVKHLKQIPMADMEIVLPEKKNPTLTPMDWLKFLSTAIFGLAAVTGSFETAKADFWVIVAIVSTVVGYCAKVYFTFQANMETYQNLITQFMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKATLKELDQKCEELLREEFGERCNFDVDDAVNKLEKLGIIAKDQIGRYYTTGLKRANEIIGTTTEELVLKARQEGGP 490
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma3g03761 490 PANTHER AMINOPEPTIDASE (DUF3754) 9 487 - -
Chma3g03761 490 Pfam Protein of unknown function (DUF3754) 264 385 IPR022227 -
Chma3g03761 490 Coils Coil 410 430 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma3g03761 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr2:157915044 Chma3g03761 Chma-Chr3:155386948 dispersed
Chma Chma-Chr3:31746538 Chma3g03761 Chma-Chr3:155386948 dispersed
Chma Chma-Chr3:155300539 Chma3g03761 Chma-Chr3:155386948 proximal