AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07258 ATGGAGACATTATCATCTCCTTCACATCAGACCCTAATTTCAGCCAATTTTTTTACTTCCAGATCTGCTTATTCTAATGGAATTTCGCTACCATCACCGGTCAAGATTCACCGTCGTAGGTTTGCTGGAGTCAAAGCTTCTGTTGCCGTTGACCAAAATACTGAGAAAAAAGTTGCCTTGGTTAGAATTGGTACTAGAGGAAGTCCGTTAGCACTTGCGCAAGCTTATGAAACACGAAAGAAACTCATGGAAACTAGTAGCGAGTTGGCAGAAGAGGGGGCTATCGAGATTATAATAATTAAAACAACCGGTGATAAAATATTGACTCAACCTCTTGCAGATATTGGTGGGAAAGGTTTGTTTACTAAAGAAATAGACGAGGCTCTTCTAAATAGTGATATCGACATTGCTGTCCATTCCATGAAAGATGTCCCAACTTATCTGCCTGACAAAACCATTTTACCTTGCAATCTTCCGCGTGAGGATGTTCGTGATGCATTCATTTGCTTGAGTGCAAGTTCTATAGCTGATCTTCCAGCAGGAAGCGTTGTTGGTACTGCGTCACTAAGAAGGAAGTCTCAACTACTTCACCGACATCCTCATCTCATTGTACAAGATAACTTTAGAGGCAACGTGCAGACAAGGTTGAAGAAACTAAAAGAAGGGAATGTCAACGCCACATTATTAGCTTTAGCCGGACTTAAGCGCTTAACTATGACTGAGCATGTGACTGCAATTCTTTCTATTGATGACATGCTTCCGGCTGTTGCACAAGGTGCAATTGGAATTGCTTGTCGAAGTGACGACGAGAAGATGGCTAATTACATAGCCAAACTAAACCACGAAGAAACAAGATTGGCGGTTGCATGTGAGCGCGCTTTTCTATTGACACTTGATGGATCTTGTAGGACACCCATTGCCGGATATGCTGCTAAAGATGAAGATGGTAATTGCCTCTTTAGAGGGTTAGTTGCCTCACCGGATGGAACTAAAGTACTGGAAACTACTAGAAGAGGATTGTATGTTTATGAAGATATGATGTTGATGGGGAAGGATGCTGGTGAGGAACTACTTAAGCGTGGTGGTCCTGGTTTCTTTAGCAGTTAG 1107 42.19 METLSSPSHQTLISANFFTSRSAYSNGISLPSPVKIHRRRFAGVKASVAVDQNTEKKVALVRIGTRGSPLALAQAYETRKKLMETSSELAEEGAIEIIIIKTTGDKILTQPLADIGGKGLFTKEIDEALLNSDIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFICLSASSIADLPAGSVVGTASLRRKSQLLHRHPHLIVQDNFRGNVQTRLKKLKEGNVNATLLALAGLKRLTMTEHVTAILSIDDMLPAVAQGAIGIACRSDDEKMANYIAKLNHEETRLAVACERAFLLTLDGSCRTPIAGYAAKDEDGNCLFRGLVASPDGTKVLETTRRGLYVYEDMMLMGKDAGEELLKRGGPGFFSS 368
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07258 368 Gene3D - 61 270 - -
Chma7g07258 368 FunFam Porphobilinogen deaminase 281 368 - -
Chma7g07258 368 FunFam Porphobilinogen deaminase, chloroplastic 165 262 - -
Chma7g07258 368 PIRSF PBGD 37 368 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 FunFam Porphobilinogen deaminase 61 164 - -
Chma7g07258 368 NCBIfam hydroxymethylbilane synthase 61 360 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 Gene3D - 162 262 - -
Chma7g07258 368 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 280 367 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 291 307 IPR022419 GO:0004418(InterPro)|GO:0018160(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 Hamap Porphobilinogen deaminase [hemC]. 60 360 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 Pfam Porphobilinogen deaminase, C-terminal domain 286 359 IPR022418 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 Coils Coil 72 92 - -
Chma7g07258 368 CDD PBP2-PBGD-1 60 339 - -
Chma7g07258 368 PRINTS Porphobilinogen deaminase signature 183 200 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 PRINTS Porphobilinogen deaminase signature 135 154 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 PRINTS Porphobilinogen deaminase signature 290 307 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 PRINTS Porphobilinogen deaminase signature 203 220 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 PRINTS Porphobilinogen deaminase signature 104 124 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 SUPERFAMILY Periplasmic binding protein-like II 61 278 - -
Chma7g07258 368 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 61 273 IPR022417 GO:0004418(InterPro)|GO:0033014(InterPro)
Chma7g07258 368 PANTHER PORPHOBILINOGEN DEAMINASE 57 366 IPR000860 GO:0004418(PANTHER)|GO:0004418(InterPro)|GO:0005737(PANTHER)|GO:0006783(PANTHER)|GO:0033014(InterPro)
Chma7g07258 368 Gene3D - 281 367 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07258 K01749 hydroxymethylbilane synthase [EC:2.5.1.61]