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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07317 ATGAAATTTGTACAAGGAAATGGGCTTGGTGAAGAAAGCCCAAGCCCAATGTTACCTAAGGTGATATCTCTACTTGAGGAAATGTCGTCGTCTATGTTTTCTGCAACTGCTCCCCATGGTACCGCACTAGGTTTTGAACAAAGCAAGGTCTTTGGCGATTTCAGCAAGTCAGATGCCGTGCATAAGAATCTTCTGCATTTCAAGAGGAAACATGTATCAGCTAAGCTGACAAACGTGAGGGTGCTGTCAAAGGAGAGAATCGAGTGTAGCACAACAAAGGTGGAGAGTAACCTTAAGTTTTTGAAAGGAGAAAAGTTTCAACTTGATGATGTAATCGAAGCTCAGCAATTTGATAGAGATATTCTTAGTGCTATATTTGAAGTGGCACGTGAAATGGAAACAATTGAGAAGAATTCACATGGAAGCCAGCTTTTGAATGGTTTTCTAATGTCCACTCTTTTTTACGAGCCCTCGACTAGGACTAGGCTTTCCTTTGAGTCAGCAATGAAGCGGTTGGGTGGTGAAGTTTTGACTACTGAAAATGCGCGCGAGTTTTCTTCAGCTGCCAAAGGAGAGACACTCGAAGATACGATTAGAACTGTTGAAGGGTATTCAGACATAATTGTCATGAGGCACTTTGAAGGCGGTGCTGCTAGAAGAGCTGCCATGACTGCTAACATTCCAGTTATTAATGCTGGTGACGGTCCAGGTCAGCACCCTACTCAGGCTCTTCTTGACGTTTACACTATTGAAAGAGAGATAGGAAAGCTGGATGGAATTAAAGTAGGTCTTGTTGGTGATCTTGCTAATGGGCGAACAGTTCGCTCACTTGCATATCTTCTTGCCAAATATAATAATGTGAAGATCTACTTTGTCTCACCCGAGGTTGTGAAGATGAAGGAGGACATCAAAGAGTACTTAACTTTAAAGGGAGTTGACTGGGAAGAAAGTGCTTATCTAATGGAAGTGGCATCAAAGTGTGATGTGGTGTACCAAACCCGCATCCAGAAAGAACGTTTTGGTGAAAGAACAGATCTCTATGATGCAGCTCGTGGAAAGTATATTGTTGATCAGAATGTGTTGAATGTCATGCAGAAGCATGCTGTTGTTATGCATCCTCTCCCAAGGCTTGATGAGATAACAGTGGATGTAGATGATGATCCAAGGGCTGCGTATTTTAGACAAGCGAAAAATGGACTTTACATTAGGATGGCTTTGTTGAAGCTCTTACTTCTTGGTTGGTGA 1245 42.33 MKFVQGNGLGEESPSPMLPKVISLLEEMSSSMFSATAPHGTALGFEQSKVFGDFSKSDAVHKNLLHFKRKHVSAKLTNVRVLSKERIECSTTKVESNLKFLKGEKFQLDDVIEAQQFDRDILSAIFEVAREMETIEKNSHGSQLLNGFLMSTLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFEGGAARRAAMTANIPVINAGDGPGQHPTQALLDVYTIEREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYNNVKIYFVSPEVVKMKEDIKEYLTLKGVDWEESAYLMEVASKCDVVYQTRIQKERFGERTDLYDAARGKYIVDQNVLNVMQKHAVVMHPLPRLDEITVDVDDDPRAAYFRQAKNGLYIRMALLKLLLLGW 414
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07317 414 NCBIfam aspartate carbamoyltransferase 110 411 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Chma7g07317 414 PRINTS Aspartate carbamoyltransferase signature 392 406 - -
Chma7g07317 414 PRINTS Aspartate carbamoyltransferase signature 370 375 - -
Chma7g07317 414 PRINTS Aspartate carbamoyltransferase signature 330 339 - -
Chma7g07317 414 PRINTS Aspartate carbamoyltransferase signature 184 193 - -
Chma7g07317 414 PRINTS Aspartate carbamoyltransferase signature 144 166 - -
Chma7g07317 414 PRINTS Aspartate carbamoyltransferase signature 238 255 - -
Chma7g07317 414 FunFam Aspartate carbamoyltransferase 110 242 - -
Chma7g07317 414 FunFam Aspartate carbamoyltransferase 2 243 398 - -
Chma7g07317 414 Gene3D Aspartate-ornithine carbamoyltransferase 239 398 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 154 173 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 376 399 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 239 250 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 PRINTS Aspartate-ornithine carbamoyltransferase superfamily signature 366 375 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 Hamap Aspartate carbamoyltransferase [pyrB]. 108 413 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Chma7g07317 414 Pfam Aspartate-ornithine carbamoyltransferase, Asp-Orn binding domain 258 409 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 Pfam Aspartate-ornithine carbamoyltransferase, carbamoyl-P binding domain 110 251 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 SUPERFAMILY Aspartate-ornithine carbamoyltransferase 106 411 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 Gene3D Aspartate-ornithine carbamoyltransferase 111 407 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 154 161 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Chma7g07317 414 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 103 411 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07317 K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
44131 Chma7g07317 Chma8g05365
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr5:299408122 Chma7g07317 Chma-Chr7:251515444 dispersed
Chma Chma-Chr7:251515444 Chma8g05374 Chma-Chr8:190163510 dispersed