AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chma7g07374 | ATGGCGGATACAGAAACGTTTGCTTTCCAAGCTGAGATCAATCAGCTTTTGAGTTTGATTATCAACACCTTCTACAGTAACAAGGAGATCTTCCTTCGTGAACTTGTTAGCAATGCTTCCGATGCTCTTGATAAGATTCGTTTTGAGAGCTTGACTGATAAGAGCAAGCTTGATGGTCAACCAGAGCTGTTCATCCATATTATTCCTGATAAGACCAACAACACATTGACCATCATCGACAGTGGAGTTGGGATGACAAAAGCTGATTTGGTGAATAATTTGGGAACCATTGCTCGATCTGGTACCAAAGAATTCATGGAAGCGATTGCTGCTGGTGCTGATGTCAGTATGATTGGACAATTTGGTGTTGGGTTCTACTCAGCTTACTTGGTTGCTGATAAGGTTGTTGTCACCACAAAGCACAATGACGATGAGCAGTATATCTGGGAGTCGCAAGCTGGTGGTTCGTTCACAGTTACCCATGATCAAGGTGAGCCACTTGGCAGAGGTACAAAAATCACTCTATACCTCAAGGAAGACCAACTCGAGTACCTAGAGGAGCGCAGACTTAAGGATTTGATCAAGAAGCATTCTGAGTTCATCAGTTACCCAATCTCTCTTTGGGTTGAGAAGACAATTGAGAAGGAAATTTCTGATGACGAGGATGAGGAAGAGAAGAAAGACGAGGAAGGAAAGGTTGAAGAGGTTGATGAAGAGAAGGAAAAGGAAGAGAAGAAAAAGAAAACAATCAAGGAAGTGTCAAACGAGTGGTCATTAATGAACAAGCAAAAACCCATCTGGATGAGGAAACCAGAAGAGATCAGTAAGGAAGAGTATGCGGCTTTTTACAAGAGTCTCACTAATGATTGGGAGGAACATTTGAACGTGAAGCACTTCTCGGTTGAAGGACAGTTGGAATTCAAAGCTGTTCTCTTTGTCCCCAAAAGAGCCCCCTTTGACTTGTTCGACTCAAAGAAGAAGCAAAACAACATCAAACTTTATGTTCGTCGTGTCTTTATCATGGACAACTGTGAGGACATCATCCCTGAATATCTAAGTTTTGTCAAAGGTATTGTGGATTCAGAAGATCTTCCACTTAACATCTCAAGAGAAATGTTGCAGCAGAACAAGATCCTCAAAGTTATCCGCAAGAATTTGGTGAAGAAGTGCATTGAACTTTTCCAAGAAATTGCTGAAAACAAGGAAGATTACACCAAGTTTTATGAAGCTTTTTCAAAGAACCTCAAGCTTGGTATCAACGAGGATTCCACAAACAGAACCAAACTTGCTGATTTACTTCGATACCACTCCACCAAAAGTGGCGATGAGATGACTAGTTTGAAGGACTATGTCACAAGGATGAAAGATGGTCAAAACGAAATCTTTTACATTACTGGTGAGAGCAAGAAATCTGTTGAGAATTCCCCGTTCCTTGAAAAGTTGAAGAAGAAGGGATACGAGGTTCTTTACATGGTTGATGCTATTGATGAGTATGCTGTGGGTCAGTTGAAGGAGTTTGAAGGTAAGAAGCTTGTTTCCGCTACCAAGGAAGGTTTGAAGCTTGAGGAAACCGAAGATGAGAAGCTAAAACAAGAATCTTTGAAGGAAAAGTTCGAGGGTTTGTGTAAGGTGATCAAGGATGTATTGGGTGACAAAGTTGAGAAGGTTATTGTATCTGACCGTGTGGTCGATTCACCTTGCTGTTTGGTGACTGGTGAGTATGGGTGGACTGCCAACATGGAAAGAATCATGAAGGCACAGGCTTTGAGAGATGCCAGCATGGCAGGCTACATGTCCAGCAAGAAAACCATGGAGATCAACCCCGAGAATTCCATTATGGAGGAGTTGAGGAAGAGGGCTGATGCAGACAAGAATGACAAATCCGTCAAGGATTTGGTGCTGTTGTTGTTTGAGACTGCTTTGTTGACTTCTGGTTTTAGTCTTGATGAGCCTAACACTTTTGGCAACAGGATTCATAGGATGTTGAAGCTTGGGCTGAGCATTGATGATGATGCAGGTGAAGGTGATGCTGACATTCCTGCTCTTGAGGAAGCTGACATTGATGCCGAGGGCAGCAAGATGGAGGAAGTCGACTAA | 2097 | 42.44 | MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDALDKIRFESLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGVGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVADKVVVTTKHNDDEQYIWESQAGGSFTVTHDQGEPLGRGTKITLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKDEEGKVEEVDEEKEKEEKKKKTIKEVSNEWSLMNKQKPIWMRKPEEISKEEYAAFYKSLTNDWEEHLNVKHFSVEGQLEFKAVLFVPKRAPFDLFDSKKKQNNIKLYVRRVFIMDNCEDIIPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFQEIAENKEDYTKFYEAFSKNLKLGINEDSTNRTKLADLLRYHSTKSGDEMTSLKDYVTRMKDGQNEIFYITGESKKSVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLEETEDEKLKQESLKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDASMAGYMSSKKTMEINPENSIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDDDAGEGDADIPALEEADIDAEGSKMEEVD | 698 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chma7g07374 | 698 | FunFam | Heat shock cognate protein | 2 | 227 | - | - | |
| Chma7g07374 | 698 | Coils | Coil | 521 | 541 | - | - | |
| Chma7g07374 | 698 | ProSitePatterns | Heat shock hsp90 proteins family signature. | 25 | 34 | IPR019805 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro) | |
| Chma7g07374 | 698 | PIRSF | HSP90-HTPG | 1 | 698 | IPR001404 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro) | |
| Chma7g07374 | 698 | Gene3D | - | 1 | 225 | IPR036890 | - | |
| Chma7g07374 | 698 | MobiDBLite | consensus disorder prediction | 218 | 247 | - | - | |
| Chma7g07374 | 698 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 29 | 180 | IPR003594 | - | |
| Chma7g07374 | 698 | SUPERFAMILY | HSP90 C-terminal domain | 541 | 662 | IPR037196 | - | |
| Chma7g07374 | 698 | FunFam | Heat shock protein 90 alpha | 517 | 667 | - | - | |
| Chma7g07374 | 698 | FunFam | Heat shock protein 90 alpha | 261 | 429 | - | - | |
| Chma7g07374 | 698 | MobiDBLite | consensus disorder prediction | 218 | 237 | - | - | |
| Chma7g07374 | 698 | Hamap | Chaperone protein HtpG [htpG]. | 2 | 663 | IPR001404 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro) | |
| Chma7g07374 | 698 | PANTHER | HEAT SHOCK PROTEIN 90 FAMILY MEMBER | 3 | 671 | IPR001404 | GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(InterPro)|GO:0006457(PANTHER)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(InterPro)|GO:0051082(PANTHER)|GO:0140662(InterPro) | |
| Chma7g07374 | 698 | SMART | HKATPase-4 | 27 | 181 | IPR003594 | - | |
| Chma7g07374 | 698 | Coils | Coil | 219 | 256 | - | - | |
| Chma7g07374 | 698 | MobiDBLite | consensus disorder prediction | 675 | 698 | - | - | |
| Chma7g07374 | 698 | Gene3D | - | 261 | 429 | - | - | |
| Chma7g07374 | 698 | Gene3D | - | 517 | 666 | IPR037196 | - | |
| Chma7g07374 | 698 | CDD | HATPase-Hsp90-like | 14 | 201 | IPR020575 | - | |
| Chma7g07374 | 698 | Pfam | Hsp90 protein | 183 | 677 | IPR001404 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro) | |
| Chma7g07374 | 698 | PRINTS | 90kDa heat shock protein signature | 26 | 48 | IPR020575 | - | |
| Chma7g07374 | 698 | PRINTS | 90kDa heat shock protein signature | 118 | 140 | IPR020575 | - | |
| Chma7g07374 | 698 | PRINTS | 90kDa heat shock protein signature | 5 | 25 | IPR020575 | - | |
| Chma7g07374 | 698 | PRINTS | 90kDa heat shock protein signature | 93 | 110 | IPR020575 | - | |
| Chma7g07374 | 698 | PRINTS | 90kDa heat shock protein signature | 169 | 186 | IPR020575 | - | |
| Chma7g07374 | 698 | PRINTS | 90kDa heat shock protein signature | 75 | 92 | IPR020575 | - | |
| Chma7g07374 | 698 | PRINTS | 90kDa heat shock protein signature | 187 | 205 | IPR020575 | - | |
| Chma7g07374 | 698 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 262 | 517 | IPR020568 | - | |
| Chma7g07374 | 698 | Gene3D | - | 430 | 516 | - | - | |
| Chma7g07374 | 698 | FunFam | Heat shock protein 90 alpha | 430 | 516 | - | - | |
| Chma7g07374 | 698 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 5 | 211 | IPR036890 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chma7g07374 | K04079 | molecular chaperone HtpG |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chma | Chma-Chr1:162592777 | Chma7g07374 | Chma-Chr7:253480772 | dispersed | |
| Chma | Chma-Chr6:19107488 | Chma7g07374 | Chma-Chr7:253480772 | dispersed | |
| Chma | Chma-Chr6:19425729 | Chma7g07374 | Chma-Chr7:253480772 | dispersed | |
| Chma | Chma-Chr6:19700453 | Chma7g07374 | Chma-Chr7:253480772 | dispersed | |
| Chma | Chma-Chr7:169490677 | Chma7g07374 | Chma-Chr7:253480772 | dispersed | |
| Chma | Chma-Chr7:253480772 | Chma8g05100 | Chma-Chr8:181431778 | dispersed | |
| Chma | Chma-Chr8:194303105 | Chma7g07374 | Chma-Chr7:253480772 | dispersed | |
| Chma | Chma-Chr7:253480772 | Chma1g10123 | Chma-Chr1:302399958 | transposed |