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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07452 ATGGAGGGCGGAGGAGCAAGAGTAGTTCATCCAGCAGTTGAACCGGTGTCTTATCTGATCGGCACATGGAAAGGAACTGGAGAAGGTGGTTTTCCCACCATTTCTTCCTTCTCTTACGGTGAAGAGCTTACCTTCACTCATCCCGGTAACAAGCCTGTAATAGCTTATTCCCAAAAGACTTGGAAGTTGAATTCTGGAGAGCCCATGCATGCTGAGAGCGGCTACTGGAGGCCAAAGCCTGATGGAACTATTGAGGTTGTCATTGCGCAGAGCACTGGTCTTGTCGAGATTCAGAAAGGAACATATGATGCTGAAAAGAAAGAGATAAACCTTCAAAGTGAGCTTGTAGGAAATGCGTCTAAGGTTAAAGAGATATCTCGCGTTTTCACTTTGGTTAACGAAGAATTAACTTACGTGGTTGAGATGGCTACCAATCTCACCAGTCGTCAGCCACATCTGAAAGCGTCGCTCAAGAAACTATAA 483 45.55 MEGGGARVVHPAVEPVSYLIGTWKGTGEGGFPTISSFSYGEELTFTHPGNKPVIAYSQKTWKLNSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEIQKGTYDAEKKEINLQSELVGNASKVKEISRVFTLVNEELTYVVEMATNLTSRQPHLKASLKKL 160
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07452 160 PANTHER THAP4 PROTEIN 8 160 IPR045165 -
Chma7g07452 160 SUPERFAMILY Lipocalins 9 159 IPR012674 -
Chma7g07452 160 Pfam THAP4-like, heme-binding beta-barrel domain 13 159 IPR014878 -
Chma7g07452 160 CDD lipocalin-heme-bd-THAP4-like 13 159 IPR014878 -
Chma7g07452 160 Gene3D - 8 160 IPR012674 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07452 K23205 THAP domain-containing protein 4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:255653757 Chma7g09405 Chma-Chr7:312879792 dispersed