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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07457 ATGATAACGTCGTCAATATTCAGTCGCACAATTAATCGTTCCATCAATCTTCATCAGTCGTTACGCTGTACTAGTATTAGTCGCCAGATGAGTACGGAAACTGAGAGTGTGGTTCATCGGTTGAAGAGTAGCGGACTGTTTCAAACTAAAGGTCTTATTGGTGGAAAATGGACTGATGCTTATGATGCCAAAACTTTTCAGGTTAACAACCCTGCTAGTGGTGATGTTATAGCTTCAGTTGCGCGAATGGGTGAGAGGGAAACAAAAGATGCAATTGGTTCAGCATATGATGCATTTACCCATTGGAGCAAGCTTACTGCTGCTGCTAGGAGTAGTCACCTACGTAACTGGTATAACTTACTGATTAAACATAAAGAAGAGCTTGGACAACTTATAACTTTGGAGCAAGGAAAACCTCTAAAAGAATCCATTGGGGAGGTTACGTATGGGGCTAGTTTCATAGAGTACTTTGCAGAGGAGGCAAAACGTGTTTATGGTGATATAATACCCTCGCCTTTGCCTGATCGTCGGCTTTTTGTTTTAAAGCAGCCTGTTGGTGTGGTCGCTGCCATCACTCCATGGAATTTCCCTTTAGCAATGATCACTAGGAAGGTTGGACCAGCTCTTGCATGTGGGTGTACTGTGGTCATAAAGCCCTCTGAGCTCACACCATTGACTGCCTTAGCAGCAGCTGAGCTTGCCCTTCAAGCAGGAATCCCACCAGGCGTCTTGAATGTGGTCATGGGAGATGCTATCAGTATAGGAACATCATTAGTTGAAAGCCCACAGGTAAGGAAAATAACATTTACTGGTTCAACAGCAGTTGGAAAGAAATTAATGGCTGGTGCAGCTGATACTGTCAAAAAGGTATCTCTTGAACTTGGTGGTAATGCACCGTGCATAATCTTCGATGATGCTGATCTGGAAGTGGCACTAAAAGGGAGTTTGGCAACCAAATTCCGTAACACTGGACAAACTTGCGTCTGTGCAAACAGAATACTTGTGCAAGAAGGCATATATGAGAAATTTACGAGTGCCTTTTCAAAGGCTGTTCAAGAACTTAAAGTTGGCAACGGTTTTAGTGAAGGTGTGGTCCAGGGACCACTTATCAACGAGGCTGCTGTAGAGAAGGTTGATTCATTTGTGCAAGATGCTGTCTCAAAGGGAGCAAAAGTTCTTCTCGGTGGTAAGAGGCACAGCCTAGGGTTTACTTTTTACGAGCCAACAATTATAGGTGATGTCAAGAATGAGATGCTCATAGCAAGGCAGGAAGTATTTGGACCTGTTGCACCTGTTATACGGTTTAAAACCGAAGAAGAAGCTATCCAGATCGCTAATGACACTCATGCAGGATTAGCTGCTTACATATTCACAAACACTCTTGAATATGGTATTGTTGGAGTCAATGAGGGATTGGTTTCTACAGAGGTGGCTCCTTTTGGAGGTTTTAAGCAGTCTGGTTTAGGACGTGAAGGTTCCAAATATGGATTGGACGAGTATCTTGAGGCAAATCAAGTATGTTTGTATGGGAAATATGGGCTGATATGGGTCTGGAGAGGGACCAAGTTGCAGCTTCATTCTGTATCTATCCACAGACGAGTGAGCTTGATTTTGTTGTGCATGCTGTGA 1629 43.46 MITSSIFSRTINRSINLHQSLRCTSISRQMSTETESVVHRLKSSGLFQTKGLIGGKWTDAYDAKTFQVNNPASGDVIASVARMGERETKDAIGSAYDAFTHWSKLTAAARSSHLRNWYNLLIKHKEELGQLITLEQGKPLKESIGEVTYGASFIEYFAEEAKRVYGDIIPSPLPDRRLFVLKQPVGVVAAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELALQAGIPPGVLNVVMGDAISIGTSLVESPQVRKITFTGSTAVGKKLMAGAADTVKKVSLELGGNAPCIIFDDADLEVALKGSLATKFRNTGQTCVCANRILVQEGIYEKFTSAFSKAVQELKVGNGFSEGVVQGPLINEAAVEKVDSFVQDAVSKGAKVLLGGKRHSLGFTFYEPTIIGDVKNEMLIARQEVFGPVAPVIRFKTEEEAIQIANDTHAGLAAYIFTNTLEYGIVGVNEGLVSTEVAPFGGFKQSGLGREGSKYGLDEYLEANQVCLYGKYGLIWVWRGTKLQLHSVSIHRRVSLILLCML 542
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07457 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 500 IPR016162 GO:0016491(InterPro)
Chma7g07457 542 NCBIfam succinate-semialdehyde dehydrogenase 68 502 IPR010102 GO:0009013(InterPro)|GO:0009450(InterPro)
Chma7g07457 542 CDD ALDH-F5-SSADH-GabD 68 508 - -
Chma7g07457 542 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 320 331 IPR016160 GO:0016491(InterPro)
Chma7g07457 542 FunFam Aldehyde dehydrogenase, putative 478 503 - -
Chma7g07457 542 FunFam Succinate-semialdehyde dehydrogenase I 63 306 - -
Chma7g07457 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 296 475 IPR016163 GO:0016620(InterPro)
Chma7g07457 542 SUPERFAMILY ALDH-like 35 507 IPR016161 GO:0016491(InterPro)
Chma7g07457 542 FunFam Succinate-semialdehyde dehydrogenase I 296 475 - -
Chma7g07457 542 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 41 508 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Chma7g07457 542 Pfam Aldehyde dehydrogenase family 57 505 IPR015590 GO:0016491(InterPro)
Chma7g07457 542 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 292 299 IPR029510 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07457 K17761 succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24]
Chma7g07457 K00135 succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:255730982 Chma9g03764 Chma-Chr9:95823396 dispersed
Chma Chma-Chr7:255730982 Chma7g07459 Chma-Chr7:255751190 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chma6g09043 . 36 295 Aldehyde Dehydrogenase gene family AT1G79440 60.687 1.62e-91 280.0
Chma8g09311 ACH 4 483 Aldehyde Dehydrogenase gene family AT4G36250 53.542 0.0 553.0
Chma4g07535 . 25 556 Aldehyde Dehydrogenase gene family AT5G62530 79.511 0.0 907.0
Chma7g07459 . 18 522 Aldehyde Dehydrogenase gene family AT1G79440 76.436 0.0 784.0
Chma7g07454 . 36 103 Aldehyde Dehydrogenase gene family AT1G79440 60.294 2.02e-23 90.1
Chma2g03913 . 204 405 Aldehyde Dehydrogenase gene family AT2G24270 73.762 2.50e-102 301.0
Chma1g02227 . 1 496 Aldehyde Dehydrogenase gene family AT2G24270 83.099 0.0 858.0
Chma6g09571 . 449 516 Aldehyde Dehydrogenase gene family AT3G48000 70.588 7.28e-28 108.0
Chma4g07702 . 120 538 Aldehyde Dehydrogenase gene family AT3G48000 84.01 0.0 756.0
Chma3g03597 . 51 241 Aldehyde Dehydrogenase gene family AT3G24503 55.981 1.30e-73 232.0
Chma5g09339 . 16 501 Aldehyde Dehydrogenase gene family AT3G24503 60.288 0.0 616.0
Chma4g07634 . 5 501 Aldehyde Dehydrogenase gene family AT1G74920 78.873 0.0 852.0
Chma6g03501 . 367 525 Aldehyde Dehydrogenase gene family AT2G14170 66.667 3.89e-65 211.0
Chma5g09335 . 7 501 Aldehyde Dehydrogenase gene family AT3G24503 68.687 0.0 715.0
Chma8g05267 . 189 269 Aldehyde Dehydrogenase gene family AT1G79440 46.667 1.56e-11 62.4
Chma1g09567 . 449 516 Aldehyde Dehydrogenase gene family AT3G48000 69.118 2.34e-28 105.0
Chma5g01741 . 1 496 Aldehyde Dehydrogenase gene family AT2G24270 88.911 0.0 930.0
Chma1g03836 . 205 320 Aldehyde Dehydrogenase gene family AT1G79440 69.828 1.09e-36 132.0
Chma9g06662 . 268 416 Aldehyde Dehydrogenase gene family AT1G23800 46.309 4.76e-33 124.0
Chma8g08345 . 236 283 Aldehyde Dehydrogenase gene family AT3G24503 64.583 1.43e-10 62.4
Chma2g04748 . 120 538 Aldehyde Dehydrogenase gene family AT3G48000 79.236 0.0 728.0
Chma7g07455 . 36 525 Aldehyde Dehydrogenase gene family AT1G79440 73.673 0.0 757.0
Chma5g09336 . 7 501 Aldehyde Dehydrogenase gene family AT3G24503 68.687 0.0 718.0
Chma6g00899 . 40 239 Aldehyde Dehydrogenase gene family AT3G24503 58.0 2.03e-76 237.0
Chma6g07865 . 19 199 Aldehyde Dehydrogenase gene family AT5G62530 77.901 6.75e-101 300.0
Chma1g03641 . 89 122 Aldehyde Dehydrogenase gene family AT3G24503 67.647 4.43e-09 51.6
Chma9g08494 . 98 272 Aldehyde Dehydrogenase gene family AT5G62530 54.237 1.92e-55 181.0
Chma5g08511 . 68 141 Aldehyde Dehydrogenase gene family AT1G23800 75.676 7.01e-33 120.0
Chma5g03868 . 133 181 Aldehyde Dehydrogenase gene family AT5G62530 67.347 8.27e-14 72.4
Chma8g07090 . 6 484 Aldehyde Dehydrogenase gene family AT1G44170 64.927 0.0 669.0
Chma4g06504 . 90 606 Aldehyde Dehydrogenase gene family AT2G14170 82.375 0.0 892.0
Chma1g04433 . 112 233 Aldehyde Dehydrogenase gene family AT1G23800 76.23 2.94e-68 212.0
Chma9g03978 . 344 453 Aldehyde Dehydrogenase gene family AT1G23800 30.952 7.97e-07 45.4
Chma9g09749 . 174 335 Aldehyde Dehydrogenase gene family AT3G24503 64.198 2.25e-68 214.0
Chma4g07562 . 3 501 Aldehyde Dehydrogenase gene family AT1G74920 78.958 0.0 856.0
Chma6g07864 . 235 556 Aldehyde Dehydrogenase gene family AT5G62530 83.23 0.0 573.0
Chma3g03571 . 327 364 Aldehyde Dehydrogenase gene family AT1G23800 78.947 4.61e-16 71.6
Chma4g06254 . 67 484 Aldehyde Dehydrogenase gene family AT4G36250 60.88 0.0 541.0
Chma9g08399 . 203 294 Aldehyde Dehydrogenase gene family AT1G79440 56.522 4.09e-14 72.8
Chma2g04109 ACH 1 483 Aldehyde Dehydrogenase gene family AT4G36250 54.658 0.0 570.0
Chma9g05529 . 272 335 Aldehyde Dehydrogenase gene family AT3G48000 78.125 5.35e-26 108.0
Chma8g06418 . 116 238 Aldehyde Dehydrogenase gene family AT1G23800 77.236 1.61e-64 214.0
Chma5g06522 . 47 224 Aldehyde Dehydrogenase gene family AT3G24503 51.124 8.92e-48 173.0
Chma4g04099 . 76 123 Aldehyde Dehydrogenase gene family AT3G24503 54.167 1.05e-11 57.8
Chma1g04009 . 441 516 Aldehyde Dehydrogenase gene family AT3G48000 61.842 1.96e-27 104.0
Chma8g07091 . 408 461 Aldehyde Dehydrogenase gene family AT1G44170 74.074 8.13e-22 92.4
Chma7g07457 . 18 522 Aldehyde Dehydrogenase gene family AT1G79440 74.851 0.0 759.0
Chma1g04798 . 69 277 Aldehyde Dehydrogenase gene family AT3G48000 82.297 8.57e-122 365.0
Chma8g02895 . 116 246 Aldehyde Dehydrogenase gene family AT2G24270 61.194 7.06e-42 152.0
Chma1g08192 . 189 255 Aldehyde Dehydrogenase gene family AT1G79440 53.409 7.91e-12 62.0
Chma1g03843 . 203 320 Aldehyde Dehydrogenase gene family AT1G79440 69.492 6.86e-35 130.0
Chma7g07453 . 122 525 Aldehyde Dehydrogenase gene family AT1G79440 75.54 0.0 642.0
Chma6g01641 . 210 321 Aldehyde Dehydrogenase gene family AT3G24503 65.179 3.59e-46 153.0
Chma8g09312 . 4 483 Aldehyde Dehydrogenase gene family AT4G36250 53.333 0.0 548.0
Chma6g03363 . 300 484 Aldehyde Dehydrogenase gene family AT1G44170 57.838 2.33e-73 227.0
Chma1g04435 . 145 237 Aldehyde Dehydrogenase gene family AT3G48000 79.57 3.15e-53 173.0
Chma6g07997 . 153 372 Aldehyde Dehydrogenase gene family AT3G24503 41.288 4.42e-52 174.0
Chma5g09338 . 3 501 Aldehyde Dehydrogenase gene family AT3G24503 67.134 0.0 704.0
Chma4g06834 . 254 279 Aldehyde Dehydrogenase gene family AT3G48170 80.769 4.77e-07 50.4
Chma4g01902 . 81 209 Aldehyde Dehydrogenase gene family AT3G24503 33.333 1.45e-12 68.2
Chma4g06255 . 8 484 Aldehyde Dehydrogenase gene family AT4G36250 60.587 0.0 612.0
Chma5g00965 . 46 241 Aldehyde Dehydrogenase gene family AT3G24503 61.224 1.50e-79 246.0
Chma5g08921 . 177 257 Aldehyde Dehydrogenase gene family AT3G66658 75.309 5.47e-41 139.0
Chma4g00796 . 44 224 Aldehyde Dehydrogenase gene family AT1G79440 51.913 3.54e-56 185.0
Chma7g06339 . 112 277 Aldehyde Dehydrogenase gene family AT1G74920 68.824 2.99e-73 233.0
Chma7g02248 . 116 162 Aldehyde Dehydrogenase gene family AT1G23800 63.83 1.05e-16 70.5
Chma5g00779 . 35 187 Aldehyde Dehydrogenase gene family AT1G74920 64.706 4.66e-64 201.0
Chma7g05167 . 53 87 Aldehyde Dehydrogenase gene family AT3G24503 64.865 9.67e-10 52.0
Chma6g06031 . 1 545 Aldehyde Dehydrogenase gene family AT3G66658 80.367 0.0 924.0