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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07628 ATGCATGATTTTTGCTTCACAATTCCATATGGAATGATAGTGTTGTGTGGTGGGATAATTGGGTATGTAAGGAAAGGCAGTACGACGTCGTTAGCTGGCGGTGTTGGCACTGGATTGTTGCTTTTCTTTGCTTCTTATTTGACTTTATCTGCTTTTCATAAGAAAAAGAATTCATGGTTTGGCTTGCTTCTTGAAACTGTTATTGCTGCTACTCTCACATGGGTTATGGGACAAAGATTTGCCGAAACTTCCAAGATAATGCCTGCTGGTGTTGTTGCCGGTATCAGTGGAGTGATGACAGCATTTTATTTATACAAGATTGTCACTGGAGGCAACCATTTTCCAGCCAAAACTGAATGA 360 40.56 MHDFCFTIPYGMIVLCGGIIGYVRKGSTTSLAGGVGTGLLLFFASYLTLSAFHKKKNSWFGLLLETVIAATLTWVMGQRFAETSKIMPAGVVAGISGVMTAFYLYKIVTGGNHFPAKTE 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07628 119 Pfam Transmembrane proteins 14C 6 103 IPR005349 GO:0016020(InterPro)
Chma7g07628 119 Gene3D - 1 111 IPR044890 -
Chma7g07628 119 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 108 IPR005349 GO:0009706(PANTHER)|GO:0015245(PANTHER)|GO:0015908(PANTHER)|GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07628 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1217295 Chma Chma7g07628 Chma-Chr7:261451868 Chma7g08676 Chma-Chr7:294578868
1242697 Chma Chma7g07628 Chma-Chr7:261451868 Chma7g07635 Chma-Chr7:261511170