AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07716 ATGGTGAAGACAACGTTAGGATGTGAACCTGTTGTTGGGTCTTTAACGCCGTCAAGAAAGAGGGATTATAGGGTCACTAATAGGTTACAAGAAGGCAAACGTCCTATATACGCTGTCGTTTTCAACTTCATTGATTCTCGTTATTTTAACGTCTTTGCTACTGTTGGTGGTAATCGTGTCACAGTGTACCAATGCCTTGAAGGTGGCGTTATTGCTGTACTTCAGTCCTACATCGATGAAGATAAGGATGAGTCTTTCTACACTGTGAGCTGGGCATGTGATGCTGACGGGCGACCATTGCTAGTTGCTGGAGGAATTAATGGTATAATCCGTGTCATTGATGCTGGAAATGAGAAGATACACAAGAGTTTCGTTGGTCACGGGGACTCTGTAAATGAAATCAGAACACAAGTACTAAGACCTTCTCTTGTGCTTTCTGCAAGTAAAGATGAATCTGTCCGTTTGTGGAATGTTGAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGTGGTCATCGCAATGAAGTGTTGAGTGTGGATTTTCATCCTTCAGATATATATCGTATTGCCAGTTGTGGTATGGATAACACCGTAAAGATATGGTCAATGAAAGAATTTTGGACGTATGTCGAGAGGTCTTTTACATGGGAGGGACTACCTTCACAATTTCCTACAAAATATGTGCAGTTTCCGGTCTTACTTGCTTCAATCCATACAAATTATGTCGACTGCAATAGGTGGCTTGGCGATTTCATGCTATCTAAGAGCGTTGATAACGAGTTCATATTATGGGAACCAAAGATGAAAGAGCACTCCCCAGGAGAGGGTACTGTAGATATCATTCAAAAATATCCCGTCCCTGAGTGTGACATTTGGTTTATTAAGCTTTCATGTGATTTCCATTTCAACGCAGCATCTATAGGGAACAGGGAAGGGAAAATCTTTGTATGGGAATTGCAGAGTAGCCCCCCTACTCTCATTGCAAGGTTATCTCATGTTCAATCCAAATCTCCCATCAGGCAAACTGCTATGTCGTTTGATGGAAGCACAATTCTTAGTTGCTGTGAAGATGGCACTATTTGGCGTTGGGATACAGTTGCAACCTCCTAG 1113 41.96 MVKTTLGCEPVVGSLTPSRKRDYRVTNRLQEGKRPIYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDADGRPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRTQVLRPSLVLSASKDESVRLWNVETGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGLPSQFPTKYVQFPVLLASIHTNYVDCNRWLGDFMLSKSVDNEFILWEPKMKEHSPGEGTVDIIQKYPVPECDIWFIKLSCDFHFNAASIGNREGKIFVWELQSSPPTLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVATS 370
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07716 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Chma7g07716 370 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 Pfam WD domain, G-beta repeat 122 157 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 Pfam WD domain, G-beta repeat 333 365 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 SUPERFAMILY WD40 repeat-like 26 365 IPR036322 GO:0005515(InterPro)
Chma7g07716 370 Gene3D - 19 368 IPR015943 GO:0005515(InterPro)
Chma7g07716 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Chma7g07716 370 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Chma7g07716 370 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Chma7g07716 370 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Chma7g07716 370 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Chma7g07716 370 SMART WD40-4 324 365 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 SMART WD40-4 160 203 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 SMART WD40-4 67 114 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 SMART WD40-4 117 157 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515(InterPro)
Chma7g07716 370 FunFam polycomb group protein FIE1 19 368 - -
Chma7g07716 370 PANTHER POLYCOMB PROTEIN 8 366 IPR051243 GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07716 K11462 polycomb protein EED
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1205948 Chma Chma6g04019 Chma-Chr6:101596803 Chma7g07716 Chma-Chr7:264041094
1205950 Chma Chma6g04021 Chma-Chr6:101656983 Chma7g07716 Chma-Chr7:264041094
1205951 Chma Chma6g04022 Chma-Chr6:101673078 Chma7g07716 Chma-Chr7:264041094
1209829 Chma Chma6g09071 Chma-Chr6:297513483 Chma7g07716 Chma-Chr7:264041094
1209830 Chma Chma6g09072 Chma-Chr6:297565078 Chma7g07716 Chma-Chr7:264041094
1209837 Chma Chma6g09079 Chma-Chr6:297858596 Chma7g07716 Chma-Chr7:264041094
1217356 Chma Chma7g07716 Chma-Chr7:264041094 Chma9g08397 Chma-Chr9:288317956