AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07717 ATGGAGTCGATAATAGCTCGAGCGTTGGAGTATACATTGAAATACTGGCTTAAATCATTTACTAGAGATCAGTTTAAGCTACAAGGCAGAACTGTTCAGCTTTATAATCTAGATATAAATGGTGATGCCTTGCACGCGAGCCTCGGGTTGCCTCCGGCTTTGAATGTTAAAACCGCGAAGGTCGGCAAGCTAGAGATAATACTCCCTTATTTGAGCAACGTACAAGTGGAGCCAATTGTTGTGCAAATCGATAAGCTTGACCTGGTGTTGGAGGAAAATGACGATTTGGATGCATATAAAAGTACAGAGAGTGCACAAACGCCATCCAGTCCAGCAAAAGGCAGTGGATATGGATTTGCGGACAAGATTGCAGATGGCATGACATTGGAAGTACGGACTGTCAATCTTTTAGTGGAGACTCATGGGGGTGCTAGACGTCGTGGAGGAGCAACTTGGGCATCACCGATGGCATCTATTACTATCCGCAACCTTTTGCTTTATACCACAAATGAGAACTGGCAGGTTGTAAATCTTAAGGAAGCGAGGGACTTTTCAAATGACAAGAAGTTCATCTACGTGTTCAAAAAGCTTGAATGGGAACATCTATCCATCGACCTCCTGCCTCACCCTGATATGTTTGCAGCATTTTCTGAGGGTGCATTTAAGGATGACGATGGTGCAAAGCGGGTGTTCTTTGGTGGGGAGCGCTTTCTTGAAGGGATATCTGGGGAAGCTTATATTACTATTCAAAGGACAGAGCTTAATAGTCCACTAGGGTTGGAACTCCAGTTACATATTACTGAAGCCGTGTGCCCAGCTTTGAGTGAACCAGGATTAAGGGCTCTTCTTCGCTTCTTTACTGGATTTTATGTCTGTCTGAATAGAGGCGATGTCAATCCAAATGCTCAAGAGCGATCAGCGGAAGCTGCAGGGCGCACACTAGTCTCCATTATGGTGGACCATATATTTTTTTGCATCAAGGATACTGATTTCCAGTTAGAACTTATGATGCAGTCACTTCTCTTTTCTCGGGCAAGTCTTTCTGACGGAGAAATCGCCAAATGCTTGACACGGGTGATGATAGGTGGAGTATTTCTGCGGGATACTTCCTCTCGCCCACCATGCGCGTTAGTGCAACCGTCAATGCAGGATGCCGCAGAGGAACCGCTGAAGATTCCAGATTTTGGAAAAGATTTCTGTCCTCCAATATATCCATTAGGGGATCAGCAATGGAAATTGAGTGACCGCGTTCCACTCATATCCCTTCATTGTCTTCAGTTTATCCCCTCACCTACCCCGCCATCGTTTTCTACACAAACTGTCATTGACTGCCATCCTCTTATGATACATCTACAAGAAGATTCCTGTCTAAGAATATCATCTTTACTAGCTGATGGAATTGTGGTTAATCATGGTGATATTTTACCAGATTATACTGTCAACTCCCTTGAATTGAAAGTCAAAGGTTTAGATATCACTGTTCCAATGGAAAATCAGAACGAGAGCTCCTTCAATGGAGCAAGACTTCATATTGAGAACCTATTCTTTCATGACTCCCCTTCCCTGAGGCTCAAGCTGCTCAATCTTGACAAAGATCCTGCATGCTTCTGTTTATGGAAAGGACAACCCATTGACGCCGGCCAAAAAAAATGGACAAGTGGTGCTTCTCTTATTAATATGTCTCTAGAAACGTGTAATAATTCAAAAGGAGTTAATGGGCCCCGTTCACACTCTTCGGAATTATGGAAATCTGTTGAGATAAAAGGTGTTTGTGTTCAAGTAGCAATGGTAACAGCAGACGGAAGCCCGTTAATAGAAATCCCACCTCCAGGAGGAGTTGTTAGGGTAGGAGTCGCTTGTGAACAATATCTGTCCAACACTTCCGTGGAGCAACTGTTTTTTGTTTTGGATCTTTATACGTATTTTGGTACGGTCGGTGAGAAAATGGCATTGGTTGGAAAAAATAAACAAAAGAAGGTGGTGAAGCGTGAGCTCTCTAATGGAAACCTGATAGAAAAGGTTCCTGGTGATACTGCTGTTAGTTTAGTAGTTAAGGACCTAAAGCTAACATTTCTAGAATCTTCCTCCATGGATATTCAGGGAATGCCTTTAGTTCAGTTTGTTGGGGAAGATCTGTTCATGGAAGTTACTCATAGAACCTTGGGTGGTGCCATGGCCATTTCGTCAACTTTAAAGTGGGACAGAGTTCAGGTGGAGTGTGCAGAAACTGAGATAAGCTCGGTACATACGAATGGTGTAGTTGTGAATGCTACCGAAGATTTTGTTCCTGTTCAAAATGGCTGCCCAAAACTGAGAGCTGTCTTTTGGGTGCAAAATGGAAGTAACTTACCATTTGTGAATTTACGTATGGTGCATGTTATTCCGTATAATGCACAGGATACAGAGTGTCATAGTTTAAGTGTTTCGGCTTGTATTGCGGGTGTGCGCCTTGCAGGAGGAATGAGTTACGCTGAAGCTCTTCTTCACCGATTTGGAATTTTAGGACCAGATGGTGGGCCAGGGGTTGGGCTCTCCAAGGGTTTGGACCATTTATCTGCGGGCCCATTGTCGAAACTTTTCAAACGATCACCTCTGCTTGTAGAGAACGTCAGGGAGAGTAAAAGTGAAAGCGTAGAGGAGGAGAATCATATTGGTAACTTGCACTTGGGTGCACCAGATGATGTAGATATATCACTAGAATTGAAGGACTGGTTATTTGCACTGGAGGGTGCAGATATGGCAGAAAAATGGTGGTTATATACTTCAGAGGATTCTTACAGAGAAGAGAGGTGCTGGCACACAACTTTTGACAGTATAAAAGCTAAGGCAAACAGCAGCAAAAAGTCCTTGGTGAATGGAAAAAAGAATTTTCCTGGCTCAAAGAAGTATCCTGTCGAATCAATTACGGTTGGTATTGAAGGCTTAAAGACGCTAAAACCCCAGCAGCAGAAGGGAACTGCACCTCAGAACGGGCACAAGCAAATTGTTGAGTCACATGGTGGTGTAGATTTTGAAGCTGATATAGTCTTGAATGAAGATGATGATGTAGATGGGATGATCAAATGGGTCTTGGAAAGTTTAAAATTTTCTGTGAAACATCCGGTTGAGGCAGTTGTAACCAAGGATGAACTGCAACATGTTGCTCAACTATGCAAGTCAGAAGTTGATTCCATGGGGCGAATAACTGCAGGAGTTTTACGTGTGTTGAAGTTAGAAGGATCTGTTGGTCAGTCAGCAATGAATCAACTAAGCAACCTTGGAAGTGAAGGGTTTGACAAGATCTTCTCGCCAGAGAACCCGCGCAGAGATAGTACTGCTTCTAGTGTCGGTATGAGTCCGTTTTCCCTAGTGGCTTCAGATAACCAACATTCTTCGTCATTCAATTCAACATTAAATTCACTCGAGGCTGCATTATTAGAATCACAGACAGATTGTGCAGCTCTTGTCACTGAACTAAGCAGTTCGGAATCTCCGAAACCACACATTCATAGTGTAGAACAACTTGCCCAGAAACTTGAGAGTATGCAGAAATTGTTATTAAAGTTGCAGACTGAGGTATAA 3561 43.19 MESIIARALEYTLKYWLKSFTRDQFKLQGRTVQLYNLDINGDALHASLGLPPALNVKTAKVGKLEIILPYLSNVQVEPIVVQIDKLDLVLEENDDLDAYKSTESAQTPSSPAKGSGYGFADKIADGMTLEVRTVNLLVETHGGARRRGGATWASPMASITIRNLLLYTTNENWQVVNLKEARDFSNDKKFIYVFKKLEWEHLSIDLLPHPDMFAAFSEGAFKDDDGAKRVFFGGERFLEGISGEAYITIQRTELNSPLGLELQLHITEAVCPALSEPGLRALLRFFTGFYVCLNRGDVNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFQLELMMQSLLFSRASLSDGEIAKCLTRVMIGGVFLRDTSSRPPCALVQPSMQDAAEEPLKIPDFGKDFCPPIYPLGDQQWKLSDRVPLISLHCLQFIPSPTPPSFSTQTVIDCHPLMIHLQEDSCLRISSLLADGIVVNHGDILPDYTVNSLELKVKGLDITVPMENQNESSFNGARLHIENLFFHDSPSLRLKLLNLDKDPACFCLWKGQPIDAGQKKWTSGASLINMSLETCNNSKGVNGPRSHSSELWKSVEIKGVCVQVAMVTADGSPLIEIPPPGGVVRVGVACEQYLSNTSVEQLFFVLDLYTYFGTVGEKMALVGKNKQKKVVKRELSNGNLIEKVPGDTAVSLVVKDLKLTFLESSSMDIQGMPLVQFVGEDLFMEVTHRTLGGAMAISSTLKWDRVQVECAETEISSVHTNGVVVNATEDFVPVQNGCPKLRAVFWVQNGSNLPFVNLRMVHVIPYNAQDTECHSLSVSACIAGVRLAGGMSYAEALLHRFGILGPDGGPGVGLSKGLDHLSAGPLSKLFKRSPLLVENVRESKSESVEEENHIGNLHLGAPDDVDISLELKDWLFALEGADMAEKWWLYTSEDSYREERCWHTTFDSIKAKANSSKKSLVNGKKNFPGSKKYPVESITVGIEGLKTLKPQQQKGTAPQNGHKQIVESHGGVDFEADIVLNEDDDVDGMIKWVLESLKFSVKHPVEAVVTKDELQHVAQLCKSEVDSMGRITAGVLRVLKLEGSVGQSAMNQLSNLGSEGFDKIFSPENPRRDSTASSVGMSPFSLVASDNQHSSSFNSTLNSLEAALLESQTDCAALVTELSSSESPKPHIHSVEQLAQKLESMQKLLLKLQTEV 1186
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07717 1186 Pfam VPS13-like, N-terminal 1 104 IPR026854 -
Chma7g07717 1186 PANTHER UNCHARACTERIZED 1 1183 IPR026728 -
Chma7g07717 1186 Coils Coil 1165 1185 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07717 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
44135 Chma7g07717 Chma8g05604
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1175704 Chma Chma2g05232 Chma-Chr2:179646198 Chma7g07717 Chma-Chr7:264051351
1217357 Chma Chma7g07717 Chma-Chr7:264051351 Chma8g05601 Chma-Chr8:195651600