AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07775 ATGAACTGGACCCACTTGTTAGATCTGAGAGCCTTTACCGACTATCTTGAAAGCAATCTTAATAATTATCTCATGATATTTAAAACACAATGCAAAAATCATTGTGATCATATAACCTCAGCAATGAAGCCCATCCCTATATTCTTGTTTTTCTGCATACTTTATTTTGATTCAGCACTAGTTTATATCACAGCCATAGATACAATACTTGTAAATCAAACCATTAAAGATGGCCAAACCATTGTTTCTGCCCAAGAAACCTTTGAGCTCGGTTTCTTTAGCCCGGGAAAGACGAACCAAAACCGATATTTAGGCATATGGTACAAAAGGTTAGCCTCGGGCACTGTTGCTTGGGTTGCCAATAGAGAGATGCCAATCAGAAACAAAACTAGTGAGCTAACTCTTCGTCCAGATGGAACTTTGATTCTTCGTGACTCTGCCGTAAATAAAATCATTTGGTCATCGGATTTATTTGGAGCAATCCGGAACCCTTTAGCTAGGCTATATGATAGTGGGAATCTTATGGTTTACAATGATGATCAAGATGGACCGGAAAATTATATTTGGCAGAGTTTTGATCATCCAGGAAATACCAATATGCCAGATTTGAAATTTGGGAGAAATTTGGAAAGGGGTTGGATTACAAACTTTACATCATGGAAAAGTGATGATGATCCTTCTCCCGGTCCCTATATGGTGTATTGGGATTTCAATGGGTTCCCACAAATATTCCAAAAAAATGGAGATGTGATCCAGTATAGACTTGGAATATGGAATTGTCTTGGGTTTACTGGCATGCCAAGTTTGAAGCCTAATCCGATTTTCACTTTCGGGTATAATTCTAATGATATAGAGACTTATGCCAAATTTAATTTGATTAGCTCGTCAGTTCTTACTAAGATGGAGTTAACTCCGTTAGGCGAAATGGCCTGGTTTAACTGGATTAATAGAACCCAAGGATGGTTTCTTTATTTGACACCAACAGTGGATAATTGTGTTAGATATGGGCTGTGCGGAGTCTATGGAAGCTGTGACATTGAGCAGTCTCCATCGTGTGACTGTTTGAAAGGGTTTACGCCAAAATATCCCAATCAATGGAAAAGTTCAGATTGGACAGGTGGATGCCGTAGGATAATACCATTGGATTGTGCTGCTGGAGATGGGTTTCGAAAGTATACATCTATCAAATTACCAGACACTCGCCAGTCATGGTTCGACAAGAGCATGACCATAGAACAATGTGAATTGAAGTGTAGGAAGGAGTGTAATTGTACAGCTTATACGACATTGGACATTAAAAATGATATCGGTTGTTTGGTATGGTATGATGAATTAAACGATATGAGGGCTTTTCCAAATGGACAATATATATACATAAGGATGGCTGCTGCAGAATTAGAGAAAGACAAATAG 1413 38.57 MNWTHLLDLRAFTDYLESNLNNYLMIFKTQCKNHCDHITSAMKPIPIFLFFCILYFDSALVYITAIDTILVNQTIKDGQTIVSAQETFELGFFSPGKTNQNRYLGIWYKRLASGTVAWVANREMPIRNKTSELTLRPDGTLILRDSAVNKIIWSSDLFGAIRNPLARLYDSGNLMVYNDDQDGPENYIWQSFDHPGNTNMPDLKFGRNLERGWITNFTSWKSDDDPSPGPYMVYWDFNGFPQIFQKNGDVIQYRLGIWNCLGFTGMPSLKPNPIFTFGYNSNDIETYAKFNLISSSVLTKMELTPLGEMAWFNWINRTQGWFLYLTPTVDNCVRYGLCGVYGSCDIEQSPSCDCLKGFTPKYPNQWKSSDWTGGCRRIIPLDCAAGDGFRKYTSIKLPDTRQSWFDKSMTIEQCELKCRKECNCTAYTTLDIKNDIGCLVWYDELNDMRAFPNGQYIYIRMAAAELEKDK 470
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07775 470 SMART ntp-6 384 462 IPR003609 -
Chma7g07775 470 Pfam PAN-like domain 383 448 IPR003609 -
Chma7g07775 470 FunFam G-type lectin S-receptor-like serine-threonine-protein kinase 61 192 - -
Chma7g07775 470 SUPERFAMILY alpha-D-mannose-specific plant lectins 116 226 IPR036426 -
Chma7g07775 470 Pfam S-locus glycoprotein domain 253 361 IPR000858 GO:0048544(InterPro)
Chma7g07775 470 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 56 465 - -
Chma7g07775 470 Gene3D - 62 193 IPR036426 -
Chma7g07775 470 CDD B-lectin 72 195 IPR001480 -
Chma7g07775 470 ProSiteProfiles Bulb-type lectin domain profile. 66 189 IPR001480 -
Chma7g07775 470 SMART blect-4 72 195 IPR001480 -
Chma7g07775 470 CDD PAN-AP-plant 380 462 - -
Chma7g07775 470 Pfam D-mannose binding lectin 115 221 IPR001480 -
Chma7g07775 470 ProSiteProfiles EGF-like domain profile. 328 364 IPR000742 -
Chma7g07775 470 PIRSF SLG 33 470 IPR035446 -
Chma7g07775 470 ProSiteProfiles PAN-Apple domain profile. 383 463 IPR003609 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07775 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:266520849 Chma7g07781 Chma-Chr7:266642179 dispersed
Chma Chma-Chr7:266446746 Chma7g07775 Chma-Chr7:266520849 tandem