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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07785 ATGCAGCAACCAAACAAAACCCTGGAATCAGACCTCCCATCACTCGCCACAATCAAAGTCAAATCATCCTCCCCTCGTTTCCGATCAACCGCCACTTCATCAACCGAGACACCAACTGCTGGAGCCCAGCGTCGTATCGGCATCGCAGTCGACTTATCCGACGAATCCGCATTCGCTGTCAAATGGGCCGTTCACCAATACCTCCGTCCCGGCGACGCCGTGATCCTAATCCACGTCCGGCCCACTTCGGTCCTTTACGGGGCCGATTGGGGCTCCGTGGATTTAGCACTTTCTGACAACGACCCAGATGAACAAACTAAAGAGAAGCTGGAAAACGACTTTGATTTGTTCACTAGTAATAAAAGTGCTGATATAGCTGGGCCGTTAGTTGAGGCCGGGATACCGTATAAGATACATATAGTGAAGGATCATGATATGAAGGAGAGGTTGTGTTTGGAAGTTGAGAGGTTGGGTTTAAGTGCTGTGATTATGGGGAGTAGGGGAGTTGGGAGGATGAGAAGCGGCGAAGGCGACGGGAGGTTAGGGAGTGTTAGTGATTATTGTGTCAGGCATTGTGTTTGTCCTGTTGTCGTTGTGAGGTTTCCTGATGAGAAGGAGGTTGCTCATGAGGGTGGTGCGGTTGTGAAAGTGGCGAAGGGGGGTGATGACGAGGAGGTGGATGAGGATGAGAGTGAGTTTCATGATGCCAGCGATGAGCGGAAATGGTAA 729 50.89 MQQPNKTLESDLPSLATIKVKSSSPRFRSTATSSTETPTAGAQRRIGIAVDLSDESAFAVKWAVHQYLRPGDAVILIHVRPTSVLYGADWGSVDLALSDNDPDEQTKEKLENDFDLFTSNKSADIAGPLVEAGIPYKIHIVKDHDMKERLCLEVERLGLSAVIMGSRGVGRMRSGEGDGRLGSVSDYCVRHCVCPVVVVRFPDEKEVAHEGGAVVKVAKGGDDEEVDEDESEFHDASDERKW 242
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07785 242 MobiDBLite consensus disorder prediction 216 242 - -
Chma7g07785 242 MobiDBLite consensus disorder prediction 21 42 - -
Chma7g07785 242 Gene3D HUPs 31 210 IPR014729 -
Chma7g07785 242 PRINTS Universal stress protein signature 178 200 IPR006015 -
Chma7g07785 242 PRINTS Universal stress protein signature 43 61 IPR006015 -
Chma7g07785 242 PANTHER OS01G0783500 PROTEIN 6 241 IPR044162 -
Chma7g07785 242 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 44 202 - -
Chma7g07785 242 MobiDBLite consensus disorder prediction 21 41 - -
Chma7g07785 242 Pfam Universal stress protein family 44 200 IPR006016 -
Chma7g07785 242 CDD USP-Like 45 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07785 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr5:65066194 Chma7g07785 Chma-Chr7:266676626 dispersed
Chma Chma-Chr5:166597787 Chma7g07785 Chma-Chr7:266676626 dispersed
Chma Chma-Chr7:11320294 Chma7g07785 Chma-Chr7:266676626 dispersed
Chma Chma-Chr7:66504478 Chma7g07785 Chma-Chr7:266676626 dispersed
Chma Chma-Chr7:266676626 Chma9g04075 Chma-Chr9:106640910 dispersed