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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07797 ATGGCTGCCTTCACATTTTCACCCAAAACTCATTCTCACTCTTGTGGTTGTGCTAGTAACAATGAAGTGTTGTTGTTGTCAAAGACAAAAGGGTTAAGAACAAATTCAGTTAGATATGAAATGAAGGTCACGTGGCAGGCAGCAAGTTTCTCAGCTGTTGCTGACGTGGAAAAGAGGAAGTTAATGAAGATGTTGTTGTTTGGTGCTGTTGTTGGTTTACCTGCTGCTGCTGGTTTGTTGGTTCCTTATTCCGACTCTTTTGCTACACCTGGTTCAGGCAGTTCCAAAGGTGGCACTGTCGCCAAAGATGAGTTTAGTAATGATATCATTGCATCAGAATGGCTAAAGACCCACGGACCTGGTGAAAGAACTCTTGCTCAAGGCTTAAAGGGACATCCTACGTACCTTATGGTCGAGAACAACAGAACGTTTGCAACATATGGGATTAATGTGGTATGCACCCATTTAGGGTGTATCGTGCCATGGAACACGGTGGAGAAGAAGTTTGTATGCCCCTGCCACGGTTCTCAGTTTGATAATGATGGCAAAGTTGTCAAGGGTCCTGCTCCTCAGTCTTTGGAACTGGCTCGTGTGGATATAGATGATGGCAAAGTGGTGTTTGCTCCATGGAGGGAAACCGATTTTAGAACAGGCGATGCTCCATGGTGGTCTTAA 675 44.89 MAAFTFSPKTHSHSCGCASNNEVLLLSKTKGLRTNSVRYEMKVTWQAASFSAVADVEKRKLMKMLLFGAVVGLPAAAGLLVPYSDSFATPGSGSSKGGTVAKDEFSNDIIASEWLKTHGPGERTLAQGLKGHPTYLMVENNRTFATYGINVVCTHLGCIVPWNTVEKKFVCPCHGSQFDNDGKVVKGPAPQSLELARVDIDDGKVVFAPWRETDFRTGDAPWWS 224
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07797 224 Gene3D Single helix bin 45 89 - -
Chma7g07797 224 CDD Rieske-cytochrome-b6f 99 224 - -
Chma7g07797 224 Gene3D - 90 224 IPR036922 GO:0051537(InterPro)
Chma7g07797 224 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 40 211 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Chma7g07797 224 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 114 207 IPR017941 GO:0051537(InterPro)
Chma7g07797 224 PRINTS Rieske 2Fe-2S subunit signature 181 193 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chma7g07797 224 PRINTS Rieske 2Fe-2S subunit signature 169 181 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chma7g07797 224 PRINTS Rieske 2Fe-2S subunit signature 148 159 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chma7g07797 224 FunFam Cytochrome b6-f complex iron-sulfur subunit 90 224 - -
Chma7g07797 224 SUPERFAMILY ISP domain 106 223 IPR036922 GO:0051537(InterPro)
Chma7g07797 224 Pfam Rieske [2Fe-2S] domain 133 193 IPR017941 GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07797 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr6:12196218 Chma7g07797 Chma-Chr7:267099664 dispersed