AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07804 ATGCCTACATCAGATCATTGTCGCACGCATTCTGTTGGAAAGCAGTGGCGGTTATGTCCATTTTGGCAATCCGGAACACCCTCTTCATCTTCATCGCCATCGCCAACACAGAATCTTCAACCTCAGAGCGCGAAAAGCTACCAAAATGGTGTAGTGTCAAATAGTCAATCTTCAAGTAAGGTGTCGTTGGTGGCAAAAACGATTTTACCCGCTAGAAGAAGGCTCAGGCTTGACCCATCTAACAATCTTTACTTTCCGTATGAGCCAGGAAAACAAGTAAAAAGTGCTGTTCGTATCAAGAACCAGAGCAGCTCTCATGTTGCTTTTAAGTTTCAAACAACCGCGCCTAAGAGCTGTTATATGCGACCTCCTGGTGGTATACTCGCTCCTGGTGAAAGCATTATTGCTACAGTTTTCAAATTTGTTGAGCAACCGGACAAAAATGAAAAGCAGCCGGACAAAAGGTGCAAGGTTAAGTTTAAGATCATGAGCCTCAAGGTCAAAGAAGGAACCGACTTTGTGCCTGAAATGTTTGATGAGCAAAAGGATGAAGTAGTTATTGAGCGAATCTTACGTGTTATTTTCCTGAATGCAGAGCGCCCTACCCCTGCATTGCAAAAACTAAAGCATCAGCTGGCCGAAGCTGAGGTTGAATTAGAATTACGGAAGAAACCTCAAGTGGATACAAGTCCTAAGGTTGTTGAGAAGGGTCTAGTTATTGATGAGTGGAAAGAACGAAGGGAAAAATACCTTGCTCGACAAAAAATTGAGGCTGTAGATTTGATGTGA 789 43.22 MPTSDHCRTHSVGKQWRLCPFWQSGTPSSSSSPSPTQNLQPQSAKSYQNGVVSNSQSSSKVSLVAKTILPARRRLRLDPSNNLYFPYEPGKQVKSAVRIKNQSSSHVAFKFQTTAPKSCYMRPPGGILAPGESIIATVFKFVEQPDKNEKQPDKRCKVKFKIMSLKVKEGTDFVPEMFDEQKDEVVIERILRVIFLNAERPTPALQKLKHQLAEAEVELELRKKPQVDTSPKVVEKGLVIDEWKERREKYLARQKIEAVDLM 262
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07804 262 Gene3D Immunoglobulins 70 199 IPR013783 -
Chma7g07804 262 SUPERFAMILY PapD-like 65 205 IPR008962 -
Chma7g07804 262 MobiDBLite consensus disorder prediction 24 53 - -
Chma7g07804 262 Pfam MSP (Major sperm protein) domain 75 181 IPR000535 -
Chma7g07804 262 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 75 255 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Chma7g07804 262 ProSiteProfiles Major sperm protein (MSP) domain profile. 74 196 IPR000535 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07804 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:267377552 Chma9g07249 Chma-Chr9:242715460 dispersed