AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07830 ATGGAGACGCCGGTGTCGAAAAGGTTGTTGAGGAAGAAGTCTTTGTCGAGAAGCTATGATGAGAATTTAATGGATGATTATTTGGATAACCAGTTAGGTGGGTTGACTCGTAAAAGGTTTAGAACGAAACAAGAGTTGGAGAAAGAGACGGAAAAGGAAGCTATGATTGCTTTATCGTTAGGGTTTCCGATTGATGCGTTGCATGAAGAGGAAAGAAAAGCTAATGTTGTGAGTCAGTTAGATGGTAAAGAACAGAATGATTATATTGTTGTGAGGAACCATATACTTGCTAGGTGGAGGGCTAATGTACAAGCGTGGCTTTCTAAAGGACAGATTAAGGAAACTGTTAGTAATGAGTATGGTCAGCTGCTGAATTCGGCTTATGATTTTCTTTTGTTTAATGGGTATATTAATTTTGGGGTTTCACCGCCGTTCAAGGCTCAGATGCCTGAGGAAGCAACCGAGGGGTCAGTGATAATCATTGGTGCAGGACTTGCAGGGTTAGCTGCAGCTCGCCAGCTGTTAGCTTTTGGTTTTAAGGTTATTGTTTTGGAGGGTAGGAATAGACCCGGCGGGAGAGTTTATACGCAGAAGATGGGGCGAAAGGGGAATTATGCTGCTGTTGATCTTGGTGGCAGTGTTATTACTGGTATCCATGCAAACCCTCTTGGGGTTTTGGCTAGACAGCTTTCGATACCTCTTCATAAAGTTAGAGATAAATGTCCATTGTATGATCCTGAGGGTCGACCTGTTGGTGATGAAATTGATTCCAAAGTAGAACATATTTTTAATAGGCTTTTAGATAAAGTTACTGAATTTAGACAAATTATGGGCAAATCAGCTGCTGATATATCTTTGGGTTCAGTTCTTGAAAGGCTTAGACAGATATATACAGTGGCCACAAAGCCTGAGGAAAAACAATTACTCGACTGGCACTTTGCAAATTTAGAATATGCAAATGCGGGTTGCCTTTCACATCTCTCTGCTGTCTATTGGGATCAAGATGATCCCTACGAAATGAGTGGTGATCATTGCTTTCTTGCAGGTGGGAATTGGAGGTTAATTGAAGCATTGTGTGAAGGGGTTCCGATTTTCTATAACAAGACTGTTGAAACAATTCGGTATGGTAATGATGGTGTTGAGGTGATTGCTGGTGATCAAACAATCCAAGCAGACATGGTGTTATGCACCGTTCCTCTTGGTGTACTAAAGAAAAAGACGGTAAAGTTTATACCAGAGTTACCAGAAAGAAAACTCAAGGCAATTGAAAAACTGGGATTTGGGTTGCTGAACAAAGTTGCTATGGTATTCCCTAGTGTCTTTTGGGGAGAAGATCTGGATACATTTGGCTGCCTTAGCAAGAATAGCAGTACGCGGGGAGAGTTCTTCTTGTTTTACGGTTATCATACTGTTTCTGGGGGTTCAGTACTTGTTGCATTAGTCGCTGGTGAAGCTGCCCAATCGTTTGAGCAAACTCAGCCATCCACTTTGCTTCATCGTGTTTTAAGCATCCTTAGAGGTATATATGGTCCAAAGGGTGTAGAGGTACCTGATCCCATCCAATCTATTTGTACAAAATGGGGAAATGATCCTCTATCTTATGGCTCATACTCTCATGTAAGGGTGCACTCTTCAGGTAGTGATTATGATATACTTGCAGAAAATGTGGAAAACCGGCTTTTCTTTGCTGGTGAAGCCACAACCCGTCAACATCCAGCCACCATGCATGGGGCATACCTAAGTGGTTTAAGAGAAGCTTCGTGCATTTATAGAGCCTCAAGGTATAGTAAGCCAATTCACAATCCTAGAAAAAGCTTTCGAAAAGTTGTTGGAGTGAGTGATACTCTTGTAAATCTTTTTAAGTATCCAGATATTGCTTTTGGGAACTTTAGTTTTGTATTTGATCCGTCAAATCAAGACCCTAAATCAACCGGGATTTTGATGGTCACTGTCGATAGTTTCAGTAGCGAGTTAGGTGATGATAATGGAAAAGTCAAGAATAGTCAACAGTCTGACAAGCAACCATTGAAGCTTTATACGACTGTAACACGTGTACAGGCACATGAGTTGGAGTCGGAGGTAGGTGGTGTTGAAAGTCAATTAAAATATCTGTGTAAGAGTCTTGGGTTGAAGTTAATGGGATCAGATAGTTTTGCCCTCATAGCCAATTCATTGATTTCCAATGTTGCTTCACGTAGAGCGAGGGTCAGAAATCGGAGAGTTCCTGTGGGCAATGTTTCATACAAATGA 2250 41.38 METPVSKRLLRKKSLSRSYDENLMDDYLDNQLGGLTRKRFRTKQELEKETEKEAMIALSLGFPIDALHEEERKANVVSQLDGKEQNDYIVVRNHILARWRANVQAWLSKGQIKETVSNEYGQLLNSAYDFLLFNGYINFGVSPPFKAQMPEEATEGSVIIIGAGLAGLAAARQLLAFGFKVIVLEGRNRPGGRVYTQKMGRKGNYAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDKCPLYDPEGRPVGDEIDSKVEHIFNRLLDKVTEFRQIMGKSAADISLGSVLERLRQIYTVATKPEEKQLLDWHFANLEYANAGCLSHLSAVYWDQDDPYEMSGDHCFLAGGNWRLIEALCEGVPIFYNKTVETIRYGNDGVEVIAGDQTIQADMVLCTVPLGVLKKKTVKFIPELPERKLKAIEKLGFGLLNKVAMVFPSVFWGEDLDTFGCLSKNSSTRGEFFLFYGYHTVSGGSVLVALVAGEAAQSFEQTQPSTLLHRVLSILRGIYGPKGVEVPDPIQSICTKWGNDPLSYGSYSHVRVHSSGSDYDILAENVENRLFFAGEATTRQHPATMHGAYLSGLREASCIYRASRYSKPIHNPRKSFRKVVGVSDTLVNLFKYPDIAFGNFSFVFDPSNQDPKSTGILMVTVDSFSSELGDDNGKVKNSQQSDKQPLKLYTTVTRVQAHELESEVGGVESQLKYLCKSLGLKLMGSDSFALIANSLISNVASRRARVRNRRVPVGNVSYK 749
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07830 749 SUPERFAMILY Homeodomain-like 49 150 IPR009057 -
Chma7g07830 749 Gene3D - 52 151 IPR036388 -
Chma7g07830 749 Pfam SWIRM domain 65 139 IPR007526 GO:0005515(InterPro)
Chma7g07830 749 FunFam Lysine-specific histone demethylase 1A 52 152 - -
Chma7g07830 749 SUPERFAMILY FAD-linked reductases, C-terminal domain 426 538 - -
Chma7g07830 749 Gene3D - 240 545 - -
Chma7g07830 749 Gene3D - 158 587 IPR036188 -
Chma7g07830 749 PANTHER FLAVIN MONOAMINE OXIDASE 61 590 IPR050281 GO:0016491(PANTHER)
Chma7g07830 749 SUPERFAMILY FAD-NAD(P)-binding domain 154 591 IPR036188 -
Chma7g07830 749 Pfam Flavin containing amine oxidoreductase 165 589 IPR002937 GO:0016491(InterPro)
Chma7g07830 749 ProSiteProfiles SWIRM domain profile. 47 148 IPR007526 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07830 K11450 [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase [EC:1.14.99.66]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr4:260540318 Chma7g07830 Chma-Chr7:267954902 dispersed
Chma Chma-Chr6:91211738 Chma7g07830 Chma-Chr7:267954902 dispersed
Chma Chma-Chr6:91221481 Chma7g07830 Chma-Chr7:267954902 dispersed
Chma Chma-Chr7:267954902 Chma8g00777 Chma-Chr8:40913461 dispersed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chma Amino_oxidase 2e-84 CL0063 TR SWI/SNF-SWI3