AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07834 ATGGAGTACGAAAAAGAATTACAAGTGGGTGTAAGAGTGGTTCAGTTAGCATGTTGTTTATGTCAAAAGATACAAAAGGGGTCATTTGGTCCTAACCCTGATCTTGTTGTTTCTAAACTTGATGATTCTCCTGTTACTGTTGCTGATTGGAGTGTACAAGCAATGATTAGTTGGATACTATCAGAATCATTCGGTAGAGAAAATGTCTCGATTGTCGCGGAAGAAGACACACAAACCCTTTCCGATATCAAATCCACATCTTTATTAGCATCTGTGCCACCCCGGTTCGGTCTCAATGGTCCAACTGCACCCCTCGAGGCTTCAGAAGTTCTTGATGCCATTAGCCGATGTAATTCAAGTGGTGGTCCAGTGGGAAGGCATTGGGTCCTTGACCCCGTTGATGGAACTTTAGGGTTTGTTCGTGGAGGTCAGTATGCGGTGGCTCTGGCTTTGATCGAAAATGGGCGGGTTGTGGTTGGGGTTCTTGGGTGCCCTAATTATTCGAGTAAAAGGAAATTGGTTAATAATTCAAGCGTACCGAAATCAGATTTGTGGCAAGAAGGGTGTGTTATGTATTCAAAAAGAGGTAGTGGTCAAGCTTGGATGCAGCCGTTGGTTTGTGGTGATGGGACACTTGAGTGGCCTAATTCGGCTAGTGTTATACGGGTTTCCTCCATTGATAATCCTGTTATGGCTACGTTTTGTGAACCGGTGGAAAAAGCTAACTCTAACCATTCGTATAGTGCTGGAATCGCTTACAGTTTAGGCCTTAGAAAGCAGCCGTTGCGTGTTTATAGCATGGTAAAATACGCAGCCATAGCACGGGGAGATGCAGAGATATACATGAAGTTTGCAAAAGCTGGATACAAGGAAAAGATATGGGATCATGCTGCTGGTGTGGTGATTGTTGAAGAAGCTGGTGGGGTTGTGACAGATGCGGGTGGCCGGCCCTTAGATTTTTCAAAAGGGGTGTATCTTGAAGGTCTTGATCGGGGGATCGTGGCATGTTCCGGGGTGAATTTGCATGAGAAAATTATAGGTGCCGTTTATGCAAGTTGGGATTCTTCTCACTTGTGA 1077 44.94 MEYEKELQVGVRVVQLACCLCQKIQKGSFGPNPDLVVSKLDDSPVTVADWSVQAMISWILSESFGRENVSIVAEEDTQTLSDIKSTSLLASVPPRFGLNGPTAPLEASEVLDAISRCNSSGGPVGRHWVLDPVDGTLGFVRGGQYAVALALIENGRVVVGVLGCPNYSSKRKLVNNSSVPKSDLWQEGCVMYSKRGSGQAWMQPLVCGDGTLEWPNSASVIRVSSIDNPVMATFCEPVEKANSNHSYSAGIAYSLGLRKQPLRVYSMVKYAAIARGDAEIYMKFAKAGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGVYLEGLDRGIVACSGVNLHEKIIGAVYASWDSSHL 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07834 358 PANTHER PHOSPHATASE 2 354 IPR051090 GO:0000103(PANTHER)|GO:0008441(PANTHER)|GO:0042578(PANTHER)
Chma7g07834 358 CDD PAP-phosphatase 6 351 - -
Chma7g07834 358 NCBIfam 3'(2'),5'-bisphosphate nucleotidase 3 356 IPR006239 GO:0006790(InterPro)|GO:0008441(InterPro)
Chma7g07834 358 Gene3D - 1 209 - -
Chma7g07834 358 ProSitePatterns Inositol monophosphatase family signature 1. 128 141 IPR020583 -
Chma7g07834 358 PRINTS Inositol monophosphatase superfamily signature 291 315 IPR000760 -
Chma7g07834 358 PRINTS Inositol monophosphatase superfamily signature 43 63 IPR000760 -
Chma7g07834 358 SUPERFAMILY Carbohydrate phosphatase 3 351 - -
Chma7g07834 358 FunFam PAP-specific phosphatase HAL2-like 222 355 - -
Chma7g07834 358 ProSitePatterns Inositol monophosphatase family signature 2. 294 308 IPR020550 GO:0046854(InterPro)
Chma7g07834 358 Gene3D - 222 352 - -
Chma7g07834 358 Pfam Inositol monophosphatase family 42 350 IPR000760 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07834 K01082 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr6:77057669 Chma7g07834 Chma-Chr7:268032368 dispersed
Chma Chma-Chr7:268032368 Chma9g07314 Chma-Chr9:245391368 dispersed