AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g07871 ATGCCATCCAGCGACGTCATGCTAGAGTTTCTACTGGTGACTCAGTACCTGTTAGCAGATTTCAATATTGCATTGCTTACACTTGAGTTGGAGTTTGTGAAGAAAGGGAATAAAGAAGAGCAGGCTAACTCCCGCGTGGCCATACATCTTGCTTCACTACCGCATGATGACTGTGCCTTGCCTTTTTCTTCACTAACATCATATTCTTCACAATGGTTTTTGATGGAGATGGTAAATGCCTTAGCTTCCTCTATGCGGATTTTGACATCAGGACAAAGGGTAACTTTTGAGTACCATTGGAATGGTTATATCTTCACAGTTAGCCAAGTTGCTGTGGAAGGGCAGGATAAGTCAGCCATTGAAAGAGGCATGCTTACATCTGATTCATACATTGTGTTTGAAGCCCCCAACTCTAGTGGAATAAAGATTGTGAATCAGCGTGAGGCTGTTAGCAGAAACATTTTCAAGCATAAGGAGTTTAATCTTCAATCGCTTGGCATTGGTGGCCTGAGCAATGAATTTGCAGATATTTTCAGGAGAGCTTTCGCTTCTAAGGTTTTCCCTCCACATGTGGCAAGCAACATGTTAAGGGAATGCTGTTTTTGGTCCCCCTGGTACTGGCAAGACTCTAATGACTCGCCAGATTGGAAAGATGTTAAACGGAAAAGATCTAAAGTGCTGAGTAAATTTGTTGGTGAGACCGAGAAGTATGTTAGGGACTTATTTGCTGATGCTGAACAAGATCAAAGAACACGAGGGGATCAAAGTGACTTGCATGTGATCATATCTGATGAAAATGCTGAGATTTATATTAACTTTAATCATAAATGCCATGTTGTAACCTATGTTTTCAACTTGCATTTTCAGTCTAGAGGTTCGACTAGGGATGGCACAGGAGAGCATGATAGCATTGTCACTCAGCTTCTTACTAAGGTTGGAGCAACTTTCTAA 951 41.54 MPSSDVMLEFLLVTQYLLADFNIALLTLELEFVKKGNKEEQANSRVAIHLASLPHDDCALPFSSLTSYSSQWFLMEMVNALASSMRILTSGQRVTFEYHWNGYIFTVSQVAVEGQDKSAIERGMLTSDSYIVFEAPNSSGIKIVNQREAVSRNIFKHKEFNLQSLGIGGLSNEFADIFRRAFASKVFPPHVASNMLRECCFWSPWYWQDSNDSPDWKDVKRKRSKVLSKFVGETEKYVRDLFADAEQDQRTRGDQSDLHVIISDENAEIYINFNHKCHVVTYVFNLHFQSRGSTRDGTGEHDSIVTQLLTKVGATF 316
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g07871 316 SUPERFAMILY Cdc48 domain 2-like 87 148 IPR029067 -
Chma7g07871 316 PANTHER VESICULAR-FUSION PROTEIN NSF 20 195 IPR039812 GO:0005795(PANTHER)|GO:0006891(PANTHER)|GO:0016887(PANTHER)|GO:0016887(InterPro)|GO:0035494(InterPro)|GO:0043001(PANTHER)
Chma7g07871 316 Gene3D - 212 315 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g07871 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr4:233313991 Chma7g07871 Chma-Chr7:269248670 dispersed