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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08112 ATGGGTTCTTCCTCATCATCACAGAAACCAGAGTCTACTACTCAAGGGGGTGGAAACACCGATTTTAAATCTGTTAGTGATCAAGAATGGAAAAGTAAGCTTACCGGAGAACAGTTTTACGTAACTCGACAAAAGGGGACGGAAAGGGCCTTTACTGGGGAATACTGGAACACCAAAACTCCTGGGACTTACCATTGCATTTGTTGCGACACTCCACTATATGAGTCATCGACCAAGTTTGATAGTGGAACTGGTTGGCCATCGTACTATCAGCCAATAGGAGACAATGTGAAGACAAAGTTAGACCTATCTATCATTTTCATGCCTCGACAAGAAGTTGTATGTGCAGTTTGTGATGCTCATCTTGGTCATGTATTTGACGATGGTCCTCCACCTACTGGGAAACGTCATTGCATCAATAGGCATTGTTTCCCTCAAGTTGAAGCCAAAGTAGGGAAAAAATTCAGGAACTTGAGCCAACAATACGTCAACAAGAAATTTTGGTTTTTTTGTTCTTGTACTCTTTCTATCTTTTTGTATTGTAAATGGTCAAGTCTTGATGTTTATACAGAGACATGGATGTGCTAG 588 40.99 MGSSSSSQKPESTTQGGGNTDFKSVSDQEWKSKLTGEQFYVTRQKGTERAFTGEYWNTKTPGTYHCICCDTPLYESSTKFDSGTGWPSYYQPIGDNVKTKLDLSIIFMPRQEVVCAVCDAHLGHVFDDGPPPTGKRHCINRHCFPQVEAKVGKKFRNLSQQYVNKKFWFFCSCTLSIFLYCKWSSLDVYTETWMC 195
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08112 195 Gene3D Peptide methionine sulfoxide reductase. 17 162 - -
Chma7g08112 195 PANTHER METHIONINE SULFOXIDE REDUCTASE 14 142 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Chma7g08112 195 FunFam Peptide methionine sulfoxide reductase MsrB 19 152 - -
Chma7g08112 195 MobiDBLite consensus disorder prediction 1 29 - -
Chma7g08112 195 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 27 149 IPR002579 GO:0033743(InterPro)
Chma7g08112 195 Pfam SelR domain 29 142 IPR002579 GO:0033743(InterPro)
Chma7g08112 195 SUPERFAMILY Mss4-like 25 146 IPR011057 -
Chma7g08112 195 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 25 147 IPR002579 GO:0033743(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08112 K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:276677012 Chma7g09596 Chma-Chr7:316524867 dispersed