AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08150 ATGTGTCACGTGTCATACGCAGAAATACAATTGATTACTCTTCATTGGCCTACATTAAGCTTTTCCAGATTCTTTGGCCGTGATTCTGCACTTGATACCAGCGTCGCAAAAATTGTGATCGATCTTGAAGAATGTCCAATTTGTTTCTTGTATTATCCAAGTTTGAATAGATCAAGATGTTGCACGAAAGGCATTTGCACTGAGTGTTTTCTCCAAATGAAGACACCGAATTCTACACGGCCTACGCAATGTCCGTTTTGTAAAACGTTGAATTACGCCGTGGAGTATAGAGGCGTGAAGAGTAAAGAGGAAAAGGGGCAGGAGCAAATTGAAGAACAAAGGGTGATAGAAGCAAAAATAAGAATAAGACAACAAGAAATTCTAGATGAAGAGGAAAGAATGATAAAAAGGCAAGAGATGAGCTCTTCAAGCGGCATAATTGAACCTAACGAGACTGAATATTTCTCCAGAGCAGCAACATCTTCTTCTGAAAGTGAGGAAATTGTGTCTGCTCCACAGCCGAGTGGCACAGAAATTCGACATCCTGTGCGCTCTAGGGAGAACAGAGATGATGAATTTGACCTTGATCCTGAGAACATAATGCTTATGGAAGCCATCTGGTTGTCCTATCAGGAGGATAACAAGCACCAACACCATAACCCAAACTATGGCGACGCTGCACAACTAGCAAAATATGCAACAGAAGTTCGTGTATTAGCATCCATGGCTCCGCAATCCGACATGGCATCAGCATCTTCATCCTCATCACCTTCTGGAGGTCTAGCATGCGCTATAGCCGCACTAGCCGAACGCCAACAAACAGGAGCAGAATCATCAACTAATTACAATAACTACGGCGTTAATACCTCAACATACAACATACATCCCGACCATAGCTCAACCGGGTTGTCACTTAATAACCATCTGCAAATAAGCAGACAAGAACATGAATCATGGGGTGAAAATGTAGTTGAACCTGAAACTGGTTATGGGTATGATCATTATGATGATGTCCACAGAGGAGGACAATTCGTGCAACAAGATGAGAATATAGTTCCTGAAAGCTTTGAAGAGCAGATGATGTTAGCTATGGCGGTTTCGTTGGCAGAGGCTCGAGCTAGGACTAGTAGTAGTACCCCAGAAGTTGCTTGGATTTAG 1158 42.66 MCHVSYAEIQLITLHWPTLSFSRFFGRDSALDTSVAKIVIDLEECPICFLYYPSLNRSRCCTKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKSKEEKGQEQIEEQRVIEAKIRIRQQEILDEEERMIKRQEMSSSSGIIEPNETEYFSRAATSSSESEEIVSAPQPSGTEIRHPVRSRENRDDEFDLDPENIMLMEAIWLSYQEDNKHQHHNPNYGDAAQLAKYATEVRVLASMAPQSDMASASSSSSPSGGLACAIAALAERQQTGAESSTNYNNYGVNTSTYNIHPDHSSTGLSLNNHLQISRQEHESWGENVVEPETGYGYDHYDDVHRGGQFVQQDENIVPESFEEQMMLAMAVSLAEARARTSSSTPEVAWI 385
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08150 385 MobiDBLite consensus disorder prediction 159 192 - -
Chma7g08150 385 PANTHER PROTEIN SIP5 41 283 IPR039301 GO:0005737(PANTHER)
Chma7g08150 385 ProSiteProfiles Zinc finger RING-type profile. 45 88 IPR001841 -
Chma7g08150 385 SUPERFAMILY RING-U-box 44 93 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08150 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr5:237189377 Chma7g08150 Chma-Chr7:278096440 dispersed