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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08225 ATGGTTTGCCTGGACAAGCATCAATTAATCCGTATTTCAGGGTGTGAGGCAAACTATAGCGAGATGGGAGGAAATGATAACCGTTTTGAATCCAAAAGAACTGTTTTTGTGACTGTGGGCACAACGTCTTTCGATTCTCTTGTTAAAGCTGTTGACACCGAGAAAGTTCAAGAAGCGTTGTTGAAGAAAGGCTACACACATATTGTAATTCAAATGGGTCGTGGATCTTACATCCCGAAAAAGTCTAGTGGTGAAGATGGATCGCTGGTTGTAGATTACTTTACGTTTTCCCAAAGCATTGCAGAGTATATGAAATCAGCATCTCTTGTCATAAGTCACGCAGGTTCAGGGAGCATATTTGAGACACTAAAACTGGCCAAACCTTTAATAGTCGTCGTTAATGAAGACTTGATGGATAACCATCAGAGTGAGCTTGCTGAAGAACTAGCAGAAAGGAAGCATTTGTTTTGTGCTCGCCCTCAAACGCTCTACCAAGTTATTGAATCTCTGGATTTGGATTCTATTGTACCATATCAGTCAGGTGACGCTACTCCGGTTGCTAAACTAATCAATAGGCATCTTGGTTTTCCTGCTGATTGA 600 41.33 MVCLDKHQLIRISGCEANYSEMGGNDNRFESKRTVFVTVGTTSFDSLVKAVDTEKVQEALLKKGYTHIVIQMGRGSYIPKKSSGEDGSLVVDYFTFSQSIAEYMKSASLVISHAGSGSIFETLKLAKPLIVVVNEDLMDNHQSELAEELAERKHLFCARPQTLYQVIESLDLDSIVPYQSGDATPVAKLINRHLGFPAD 199
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08225 199 PANTHER UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13 30 198 IPR052474 GO:0006488(PANTHER)|GO:0043541(PANTHER)
Chma7g08225 199 FunFam UDP-N-acetylglucosamine transferase subunit alg13 29 194 - -
Chma7g08225 199 Gene3D Glycogen Phosphorylase B; 29 194 - -
Chma7g08225 199 Pfam Glycosyltransferase family 28 C-terminal domain 34 186 IPR007235 GO:0016758(InterPro)
Chma7g08225 199 SUPERFAMILY UDP-Glycosyltransferase-glycogen phosphorylase 61 170 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08225 K07432 beta-1,4-N-acetylglucosaminyltransferase [EC:2.4.1.141]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr1:84203377 Chma7g08225 Chma-Chr7:280948347 dispersed
Chma Chma-Chr7:217876536 Chma7g08225 Chma-Chr7:280948347 dispersed