Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chma7g08399	ATGAATGCTTTAAGATTTGGGGTTTATTGTGATCCCATAAACCCTGCTCCTTCAACTTTCAAATCTTCAGCAATCTTGATGGACAATCGCAAAAACAATCTTACTTGTATTCGAGCTCAACAGTCTAAGACGAAAGACGTGCCTATAATTACTACTTCATCCAATGTATCACTAATTGAAGAACTGAAAAGTAAAGATTGGGAAATTGGAGTTTTAAAAGATGAAATAGCTGCAACTCAGGGAATTCGAATAAGAAGACGACCTCCAACAGGACCTCCTTTGCATTATGTTGGTCCCTTGGAGCTCCTTTTAAAGAATGAAGGGAATAGTCCCCGTAACATACTTGAAGAAATTGTATGGAACAAAGACGTAGAGGTTACCCAGATGAAAGAGAGATACCCACTATTTTCGCTAAAAGAGGCTCTCAACAGTGCTCCTCCTTCAAGGGACTTTGTAGGAGCTCTCAAGGCGTCATATTTGCGAACTGGAGTGCCTGGTTTAATTGCTGAAGTGAAAAAGGCTTCACCGAGTAGAGGAGTTCTAAGGGAAGATTTTCACCCTGTTGAAGTTGCAAAAGCCTATGAGAAAGGTGGAGCAGCATGCCTCAGTGTTTTGACCGATTCTAAATATTTTCAGGGGAGCTTCGAGAATCTAGAGGCTATACGGAATGCTGGAGTGAAGTGCCCTCTCTTGTGCAAAGAGTTCATCGTCGATGCATGGCAGCTGTATTATGGGCGAACAAAGGGTGCAGACGCTGTTTTGTTAATTGCAGGCGTCTTACCAGATCTTGACATCAAATACATGCTTAAGATATGCAAAATGATTGGACTGACAGCACTCGTTGAGGTACATGATGAGAACGAAATGGATCGCATGCTGGCAATTGATGGCATTGAGCTCATTGGCATCAACAACCGTAACCTCGAAACATTTGAAGTTGATATTAGTAACACAAAGAAGTTGCTTGAAGGTGAGCGTGGGGAGAAGATCAGACAGAAGGACATAATAGTGGTCGGAGAGTCTGGACTGTTTACTCCTGCAGATATTGCTTATGTACAAGAAGCTGGCGTGAAAGCTATATTGGTCGGGGAGTCAATTGTGAAGCAGAAAGATCCGACACAAGGAATTAGAGAACTTTTTGGAAAAGATATATCAGCTTAG	1161	42.03	MNALRFGVYCDPINPAPSTFKSSAILMDNRKNNLTCIRAQQSKTKDVPIITTSSNVSLIEELKSKDWEIGVLKDEIAATQGIRIRRRPPTGPPLHYVGPLELLLKNEGNSPRNILEEIVWNKDVEVTQMKERYPLFSLKEALNSAPPSRDFVGALKASYLRTGVPGLIAEVKKASPSRGVLREDFHPVEVAKAYEKGGAACLSVLTDSKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQLYYGRTKGADAVLLIAGVLPDLDIKYMLKICKMIGLTALVEVHDENEMDRMLAIDGIELIGINNRNLETFEVDISNTKKLLEGERGEKIRQKDIIVVGESGLFTPADIAYVQEAGVKAILVGESIVKQKDPTQGIRELFGKDISA	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chma7g08399	386	ProSitePatterns	Indole-3-glycerol phosphate synthase signature.	167	185	IPR001468	GO:0004425(InterPro)\|GO:0006568(InterPro)
	Chma7g08399	386	FunFam	Indole-3-glycerol phosphate synthase chloroplastic	107	385	-	-
	Chma7g08399	386	SUPERFAMILY	Ribulose-phoshate binding barrel	122	381	IPR011060	-
	Chma7g08399	386	Pfam	Indole-3-glycerol phosphate synthase	115	379	IPR013798	GO:0004425(InterPro)
	Chma7g08399	386	Gene3D	Aldolase class I	107	385	IPR013785	-
	Chma7g08399	386	CDD	IGPS	151	379	IPR013798	GO:0004425(InterPro)
	Chma7g08399	386	PANTHER	TRYPTOPHAN BIOSYNTHESIS PROTEIN	57	382	IPR045186	GO:0000162(PANTHER)\|GO:0004425(PANTHER)\|GO:0004425(InterPro)\|GO:0004640(PANTHER)
	Chma7g08399	386	Hamap	Indole-3-glycerol phosphate synthase [trpC].	113	381	IPR013798	GO:0004425(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chma7g08399	K01609	indole-3-glycerol phosphate synthase [EC:4.1.1.48]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	43948	Chma5g06591	Chma7g08399

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chma	Chma-Chr5:240767076	Chma7g08399	Chma-Chr7:286759716	dispersed
	Chma	Chma-Chr7:38342474	Chma7g08399	Chma-Chr7:286759716	dispersed
	Chma	Chma-Chr7:286759716	Chma8g05797	Chma-Chr8:201344330	dispersed