AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08407 ATGACCCCACTTTCCAACCTGGACTACAAATCAATCAAAGACGACGCGTGGTACACCTCCGGCGTAATCCTCGAAGACAACGACCGTCGTCTTCGCGTCAAGCTCCAGGACTTTGTCGACTCCACTTTCGACGAGGTTTTCACCGTTAAAGAGTTTCAAAATCTCGATGACGTCAGCAAGTTTGTTAGGCGTTTTAGGCCTGTGTCAGCTGCGGTTGAAGATAACGAGTGTGCGAAAGTCACGGAGAATATGACGGTTTGTGCTAGTTATCACGGAGATGATGGTTCGTTGCGTTATTTTGACGCTGTTGTTGATACTGTGCATTACAAAGAGCATACCCCTGAAAAATGCATATGCAACTATGTGCTACACTGGCTGCATGGTCCTGCAGTGGGCAATCTAACTGCAGCAACACTGGAAGACATATACCTCATCAAGTCTGGCCCTATTGATTCCACAGTGGCCAAGTTCACAAAGTTTGTGAAGGAAAAACTTAAAGGGGGCTCGTCTGAATTTACTCTGATCCCTAAGATGCCATTTTTGTCTCCACGAACAAGACACAGTTCTCACGATGGATCTGTTGAAGGGAGTGAAAGATTCACCACCCAATTTACTGATGATGACAGAGATATGGGAGGTGTCAAGCAAACCGGGAGTCATCATTACATAATATTGGAGAATTTGGAAAAAGATTTATGTCCAGTGTTAATGACGGCGTTCATACATGAACAAACCACAATAACAGCACAGGCATACGTTTTTCCATGCTTATCAAAAGAAATTTACGCGAGAGGAGCAATTGTGGCTGATAGCAGACCAAATCTCACGAAGATATGTAAATTTATAAGCAATCCAAATCACTTTATCATATCTTGCTCTGGAAGGCCTTGGGTAATAGCTGAAGACATACTTAGGACTGGATCTTTCAACACAAACCTGCGGGAATTGCAGCCAAAGTCTGAGCATCAGGTGGTGAAAACTGGTAAGCTGGCGCAAGATATGAAGATGACGTTTGGGATTGGGCGTCCAACCCTTCATACGAGCATATGCATATCTTCCAGTTCACCTTCAGCTGCTCACCACATTGCGCCCCGTGTTCGCAAAAGGGGAATTCATCAGACGTCTGACGCTGGTACACATGATTCAACTCCAACGCCTCAAACAACGGACGATGAATCGATACTGCCAGCATCAGCTGGCCACCAAGGTATATGCGCATATGATTCGCATAGGACCTGTCCAATGAGTCGTGCTGCAAAAGAAGTAGAAAAGTGCCAACACCAGCTTCAAGAATATGTGTTGCATCCACGCATACAACAGCTGTTGCACGCACACGTGAACAGTGTACAGATACCTCATCCAGGAGAACCCCCTCGGTTTTTGCAGCTGTATATCTGTGATACCGACAATGAAGCCGCTCATCGGTTAAGCCATTTTGGATTGGACCATCATAATGCGTTGGTCCAGCTGTTGAGATTTTCCAGTGATAAGCTCAACGAAGCAGATGTTCTGGATTTTAAGATATGCGTCAAGTACTACAACGCAGGAGAAAAAGTTGTGCCAAACACTGTTCCCTCCCATACTCTTCGTATCACAGGTGTTCTAGGTATATATGCATTCTCTGATGCAGCTGCCGTTGTTAGTCGTTCAAATGTTCATGCTGAAGTAAAAGTCGTAACGTATTCTCCAGTTGGGTCAACTGCTATGGCAGCAACAGAAATGCGTGCAAGATGGGTGATTCTTGATCAGTAA 1752 45.09 MTPLSNLDYKSIKDDAWYTSGVILEDNDRRLRVKLQDFVDSTFDEVFTVKEFQNLDDVSKFVRRFRPVSAAVEDNECAKVTENMTVCASYHGDDGSLRYFDAVVDTVHYKEHTPEKCICNYVLHWLHGPAVGNLTAATLEDIYLIKSGPIDSTVAKFTKFVKEKLKGGSSEFTLIPKMPFLSPRTRHSSHDGSVEGSERFTTQFTDDDRDMGGVKQTGSHHYIILENLEKDLCPVLMTAFIHEQTTITAQAYVFPCLSKEIYARGAIVADSRPNLTKICKFISNPNHFIISCSGRPWVIAEDILRTGSFNTNLRELQPKSEHQVVKTGKLAQDMKMTFGIGRPTLHTSICISSSSPSAAHHIAPRVRKRGIHQTSDAGTHDSTPTPQTTDDESILPASAGHQGICAYDSHRTCPMSRAAKEVEKCQHQLQEYVLHPRIQQLLHAHVNSVQIPHPGEPPRFLQLYICDTDNEAAHRLSHFGLDHHNALVQLLRFSSDKLNEADVLDFKICVKYYNAGEKVVPNTVPSHTLRITGVLGIYAFSDAAAVVSRSNVHAEVKVVTYSPVGSTAMAATEMRARWVILDQ 583
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08407 583 MobiDBLite consensus disorder prediction 370 395 - -
Chma7g08407 583 PANTHER SAWADEE PROTEIN 5 327 - -
Chma7g08407 583 MobiDBLite consensus disorder prediction 376 395 - -
Chma7g08407 583 Gene3D - 72 139 - -
Chma7g08407 583 Pfam SAWADEE domain 6 142 IPR032001 GO:0003682(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08407 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr3:14523628 Chma7g08407 Chma-Chr7:287361242 dispersed
Chma Chma-Chr3:112313031 Chma7g08407 Chma-Chr7:287361242 dispersed
Chma Chma-Chr7:287361242 Chma8g07892 Chma-Chr8:292214160 dispersed