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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08408 ATGCTTCAGACAATTATAATGGTTGTTGTCGTATCATATTTTGTAATGACCGATGTTGTTGTTGGAATTAGATTTGTGATTGATAGAGAAGAATGTTTGTCTCATAATATCGAATATGAAGGCGATACTGTTCATGTTTCTTTCGTTGTAATCAAGGCTGAATCGCCTTGGCATTTCTCTGAAGACGGCGTTGATCTTGTGATTAGAGACCCGACAGGAGAGTTGGTTTATGATGTATATGACAGCGCTAGTGAGAAGCACGAGTTCATAGCTCAGAAAAAAGGTTTGTATAACTTTTGTTTCACAAACAAGTCTCCGTATCACGAGACTGTTGACTTTGATGTTCAAGCTGGACATTTCGCACACTATGATCAGCATGCAAAAGATGAGCATATCAAGCCGTTGTTTGATCAGATAGCAAAACTGGAAGAAGCTCTATACAACATTCAGTTTGAACAGCATTGGTTACAAGCTGAGAATGATCGCCAGGCAGTTGTAAATGAAAAAATGGGTAAGAGAGCAGTCCACAAGGCGCTGATTGAATCAGCAGCACTGATTGGAGCTAGCATCCTCCAGGTTTATCTTCTGCAACGCCTGTTTGAGCGAAAGCTTGGGTCTTCAAGAGTGTAA 630 40.48 MLQTIIMVVVVSYFVMTDVVVGIRFVIDREECLSHNIEYEGDTVHVSFVVIKAESPWHFSEDGVDLVIRDPTGELVYDVYDSASEKHEFIAQKKGLYNFCFTNKSPYHETVDFDVQAGHFAHYDQHAKDEHIKPLFDQIAKLEEALYNIQFEQHWLQAENDRQAVVNEKMGKRAVHKALIESAALIGASILQVYLLQRLFERKLGSSRV 209
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08408 209 ProSiteProfiles GOLD domain profile. 30 117 IPR009038 -
Chma7g08408 209 Pfam emp24-gp25L-p24 family-GOLD 29 201 IPR009038 -
Chma7g08408 209 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 14 201 IPR015720 GO:0005783(PANTHER)|GO:0005793(PANTHER)|GO:0005794(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0007030(PANTHER)|GO:0030134(PANTHER)
Chma7g08408 209 SMART EMP24-GP25L-2 22 201 IPR009038 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08408 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
43997 Chma6g01805 Chma7g08408
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:287417524 Chma8g05163 Chma-Chr8:184203446 dispersed
Chma Chma-Chr7:287417524 Chma7g08414 Chma-Chr7:287508055 proximal
Chma Chma-Chr6:40794982 Chma7g08408 Chma-Chr7:287417524 wgd