AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08417 ATGCAGCAGACGGAATCACCCATGAAATATGGCACCAACGGTCGACCTACAAATGGCCAACCTGTAAAATTGGGTGCTAATGGTAAACCAGTGAATTTGGGTGCTAATGGACAACCCGTGAAATTAGGTAGCAAAGGTCAACCGATCACAATGGTTTCCACCAGTGACGTGGTAAATAACAAACAAACAGCCGGAATAGTGAATGGGTCAACAAAAGTTGTTAATGGAACAAGTCTTGTTAGGAGAGCGACCACACCGCCGCTAGTTAAGTCTGTAAAAGTTATAGAATCCACAGGCTTTCCGCCTTCTGAGGAATTGAGGGTCTTGCCGTCTGATGAAAGTTTCAGTTGGGCGAATGAGAATTATAATTCGGTACAAAGATCAATAGATGTGTGGTCTTTTGTTCTTTCTTTACGTGTTCGTGTTTTATTAGACAATGCTAAGTGGGCGTATCCTGGAGGCTTCACAGAAGACAAACAGAAAGGCAGAAGAAGAAAAACGGCTGCATGGTTAAGAGAGCGCGTCCTTCAACTTGGTCCAACTTTTATTAAACTTGGGCAGTTATCTTCAACAAGATCAGATCTATTTCCACGTGAATTTGTCGACGAGCTCGCCAAATTACAGGATAGAGTACCGGCATTCTCACCAGAAAAAGCGAAGGGTTTCATTGAAAAAGAATTGGGTGCTCCGGTTAATATAATCTTTAAGGAGTTTGAAGAACGACCAATTGCAGCTGCTAGTCTTGGTCAGGTACATCGTGCAATCTTACATAATGGAGAGAAAGTAGTTGTTAAAGTTCAAAGACCTGGTCTGAAGAAACTTTTTGACATCGATTTACGGAATCTAAAGCTAGTCGCAGAGTATTTTCAAAGAAGTGAAACTCTTGGTGGCCCAACAAGGGACTGGATGGGAATCTATGATGAATGTGCAAAGATCTTGTACCAGGAGATTGATTATATAAATGAAGGGAAAAATGCTGATAGATTTCGTCGGGACTTCCGTAATATAAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTATACTGCAACGAAGGTGCTGACTTTGGAGTATGTTCCAGGCATTAAGATCAACAATATAGATGCTATAAAAGAGAGGAGTTACAGTCGATCCCGGATCTCTTCACGCGCCATTGAATCATACTTGATTCAGATCTTGAAAACAGGTTTCTTTCATGCTGATCCTCATCCCGGAAATCTTGCTATTGATGTGGACGAATCACTAATCTACTATGATTTTGGCATGATGGGGGAGATTAAGTCCTTCACCAGAGAAAGATTGATGGATCTTTTTTATGCGGTTTATGAAAAAGATGCAAAAAAGGTTATGAACAGTTTGGTAAGTCTTGAAGCCCTTCAACCTACAGGAGACATGTCACCGGTTAGGCGATCCATTCAGTTCTTTTTGGACAATTTGCTTAATCAATCACCAGATCAGCAGACAACTTTGGCTGCCATAGGCGAGGATTTATTTTCTATAGCAACGGATCAGCCTTTTCGGTTCCCATCCACCTTCACGTTTGTAATTAGGGCATTTTCCACTCTTGAAGGAATTGGCTACTCTCTTGACCCAGATTTTTCGTTTGTTAAGATTGCTGCGCCTTATGCACAGGAACTGTTAGATCTCAAAGAACAGCGGCCAAGTGGAACACAACTTGTTGCGGAAATGCGTAAACAAGCTGATGATGCAAGATCAAATACCATGTCGATGCCTTACAGAGTTCAGCGAATTGAAGAGTTTGTGAAACAACTAGAAATAGGAGACGTTAAACTTCGTGTCAGAGTTCTTGAGTCTGAACGAGCAGCTAAGAAGGCAACAATATTGCAAATGGCAACAATGTATACAATAATCGGGGGTACGCTTGTAAACATTGGTGTCACATTTAGCACACAAGGCAGCCAACTTATAGCAAACGGGTCCTTTGTTGCCGCAGGTGTTTTCATAGCTTTGCTTATTAGGTCCATGCAAAGGGTGAAGAAGCTTGATAAATTCGAGAAGATGATATAA 2028 41.67 MQQTESPMKYGTNGRPTNGQPVKLGANGKPVNLGANGQPVKLGSKGQPITMVSTSDVVNNKQTAGIVNGSTKVVNGTSLVRRATTPPLVKSVKVIESTGFPPSEELRVLPSDESFSWANENYNSVQRSIDVWSFVLSLRVRVLLDNAKWAYPGGFTEDKQKGRRRKTAAWLRERVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKAKGFIEKELGAPVNIIFKEFEERPIAAASLGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLRNLKLVAEYFQRSETLGGPTRDWMGIYDECAKILYQEIDYINEGKNADRFRRDFRNIKWVRVPQVFWDYTATKVLTLEYVPGIKINNIDAIKERSYSRSRISSRAIESYLIQILKTGFFHADPHPGNLAIDVDESLIYYDFGMMGEIKSFTRERLMDLFYAVYEKDAKKVMNSLVSLEALQPTGDMSPVRRSIQFFLDNLLNQSPDQQTTLAAIGEDLFSIATDQPFRFPSTFTFVIRAFSTLEGIGYSLDPDFSFVKIAAPYAQELLDLKEQRPSGTQLVAEMRKQADDARSNTMSMPYRVQRIEEFVKQLEIGDVKLRVRVLESERAAKKATILQMATMYTIIGGTLVNIGVTFSTQGSQLIANGSFVAAGVFIALLIRSMQRVKKLDKFEKMI 675
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08417 675 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 109 607 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
Chma7g08417 675 MobiDBLite consensus disorder prediction 1 23 - -
Chma7g08417 675 Pfam ABC1 atypical kinase-like domain 206 452 IPR004147 -
Chma7g08417 675 MobiDBLite consensus disorder prediction 1 20 - -
Chma7g08417 675 SUPERFAMILY Protein kinase-like (PK-like) 208 453 IPR011009 -
Chma7g08417 675 CDD ABC1-ADCK3-like 206 453 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08417 K03688 ubiquinone biosynthesis protein
Chma7g08417 K08869 aarF domain-containing kinase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr2:94036082 Chma7g08417 Chma-Chr7:287541139 dispersed
Chma Chma-Chr7:287541139 Chma8g08113 Chma-Chr8:302766730 dispersed
Chma Chma-Chr7:287541139 Chma7g08418 Chma-Chr7:287605211 tandem