Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chma7g08523 | ATGGATTTTGAGTTGCGAAGAGCGAGAGAGAAACTAGAAAAGGAACAAAAAGATCGAAAAGAAAAAGCGAAACAAAGATTGGATAAAGAAAGAAAAGCTAAACAAGAAGCCACACGTCAGCGTGAAGCTATTGAGGCTGCTCAAAGATCTAGAAGGATTCATGCTATGGAAGCTCAACTTAAGGCAGATCAGCAGATGGAAGAGAACATCTTTTCCGGAAGAGGAATTTCTTTTACTCGTGTTTTAGAAGCAGTACCTTTTGAGGGTTCCGGAGATAAGATCAAACTACCAAATTCATGTTTCAACGATTTATCCGGTGAAGGTGCTTTTGAAAAAGGTCCGCTTCATTTCCAGTTGTCAGTAGTTGACCAAGATAAGTCTTCCACCCATGCCGGAGTCTTGGAATTTAGTGCTGAAGAAGGTACTGTCGGGATCCCGCCTCACATTTGGAATAACTTATACTCTAAACAAGATCCAATGACTCCATTAATTGAAGTGAAGTACGTCTGGTTAGCAAAGGGAACATATGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCAAACCACAAAGCCGTTCTTGAAACAACCCTTCGCCAGCATGCGACTTTATCTGAAAATGAAGTTTTAACTGTCAAACATGGTGTGTTGACTTACCATCTACGTGTACTTGAGCTGAAACCCTCACCAAGTGTATCTGTTCTTGAAACAGATATTGAAGTCGACATTATGGGTCCTGATACACTTCCTGAAAAACCCAACAACCAACACGTTCTGAAACCACTAACGTTCGGGAAATCAGAATCTGGTGTTATAAATGAAGGGGAATACGTTTATTACAAATTTTCAGTAGATGATGACACATGGGGTATAATTAGTCGAGGAGATGCTGAAATTGAAGTGAAGTTAGATTCAGAAGCTAAAGATGGAGATACTGATCTTTATCTTTCACAACACCCGTTATTATTCCCAAACACGCACCAACATGGTTGGTCTAGCCATGACATGGGTTCAAAATGCTTAGTTCTTGGGTCAAAGGACCAGAACCTGGGTGCTGGAACTTACAGTGTCGGTGTATATGGCTTCAAAGGAACCACAAAATACAATATTATAGTATCCGTTCAAGATACTTCCAACTCAAAGGTAGTTCAACAACCTGTCTCTGCAGCTTCTTCTTCATCAACAGCGGATACTGTAGAATGCAGCAATTGCAAACATTATATACCCTTGAGAACCATAGCACTTCATGAGGCGTATTGCAGGAGACATAATGTCGTTTGTCAACATGAGGGATGTGGTATAGTGTTGAGGACTGAAGAGGTTAAGAACCATGTTCATTGCGAGAAATGTGGACTGGCTTTTCATAGTGGAGAGATTGAAAAACATATGAAAGTGTTTCATGAGCCGCTAACTTGTCCGTGTGGGGTCATCCTTGAGAAGACACAGATGGTGCAACACCAGTCTTCAGAGTGTGCCTTACGTCTTGTGACATGTCGATTTTGTGGAGACATGGTTCAAGCTGGTTCTTTAGCTGCTGATACACGGGATCGGTTAAGAGGACTCTCAGAGCATGAGAGTCTTTGTGGGTCCAGAATTGCCCCATGTGACTCTTGTGGTCGGTCTGTCATGTTGAAAGAAATGGACATTCATCAAGTAGCTGTTCATCAGAAGAGCTGA | 1683 | 41.71 | MDFELRRAREKLEKEQKDRKEKAKQRLDKERKAKQEATRQREAIEAAQRSRRIHAMEAQLKADQQMEENIFSGRGISFTRVLEAVPFEGSGDKIKLPNSCFNDLSGEGAFEKGPLHFQLSVVDQDKSSTHAGVLEFSAEEGTVGIPPHIWNNLYSKQDPMTPLIEVKYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSENEVLTVKHGVLTYHLRVLELKPSPSVSVLETDIEVDIMGPDTLPEKPNNQHVLKPLTFGKSESGVINEGEYVYYKFSVDDDTWGIISRGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKCLVLGSKDQNLGAGTYSVGVYGFKGTTKYNIIVSVQDTSNSKVVQQPVSAASSSSTADTVECSNCKHYIPLRTIALHEAYCRRHNVVCQHEGCGIVLRTEEVKNHVHCEKCGLAFHSGEIEKHMKVFHEPLTCPCGVILEKTQMVQHQSSECALRLVTCRFCGDMVQAGSLAADTRDRLRGLSEHESLCGSRIAPCDSCGRSVMLKEMDIHQVAVHQKS | 560 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chma7g08523 | 560 | Pfam | TRAFD1-XAF1, zinc finger | 523 | 552 | IPR049439 | - | |
| Chma7g08523 | 560 | Pfam | Ubiquitin fusion degradation protein UFD1 | 90 | 248 | IPR004854 | GO:0006511(InterPro) | |
| Chma7g08523 | 560 | Gene3D | - | 173 | 246 | - | - | |
| Chma7g08523 | 560 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Chma7g08523 | 560 | PANTHER | UBIQUITIN FUSION DEGRADATON PROTEIN 1 | 1 | 532 | IPR004854 | GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER) | |
| Chma7g08523 | 560 | Coils | Coil | 5 | 50 | - | - | |
| Chma7g08523 | 560 | Gene3D | - | 70 | 171 | IPR042299 | - | |
| Chma7g08523 | 560 | Gene3D | - | 268 | 382 | - | - | |
| Chma7g08523 | 560 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 468 | 520 | IPR013083 | - | |
| Chma7g08523 | 560 | SUPERFAMILY | TRAF domain-like | 401 | 448 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chma7g08523 | K14016 | ubiquitin fusion degradation protein 1 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chma | Chma-Chr7:291095105 | Chma7g08523 | Chma-Chr7:291287291 | proximal |