AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08523 ATGGATTTTGAGTTGCGAAGAGCGAGAGAGAAACTAGAAAAGGAACAAAAAGATCGAAAAGAAAAAGCGAAACAAAGATTGGATAAAGAAAGAAAAGCTAAACAAGAAGCCACACGTCAGCGTGAAGCTATTGAGGCTGCTCAAAGATCTAGAAGGATTCATGCTATGGAAGCTCAACTTAAGGCAGATCAGCAGATGGAAGAGAACATCTTTTCCGGAAGAGGAATTTCTTTTACTCGTGTTTTAGAAGCAGTACCTTTTGAGGGTTCCGGAGATAAGATCAAACTACCAAATTCATGTTTCAACGATTTATCCGGTGAAGGTGCTTTTGAAAAAGGTCCGCTTCATTTCCAGTTGTCAGTAGTTGACCAAGATAAGTCTTCCACCCATGCCGGAGTCTTGGAATTTAGTGCTGAAGAAGGTACTGTCGGGATCCCGCCTCACATTTGGAATAACTTATACTCTAAACAAGATCCAATGACTCCATTAATTGAAGTGAAGTACGTCTGGTTAGCAAAGGGAACATATGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCAAACCACAAAGCCGTTCTTGAAACAACCCTTCGCCAGCATGCGACTTTATCTGAAAATGAAGTTTTAACTGTCAAACATGGTGTGTTGACTTACCATCTACGTGTACTTGAGCTGAAACCCTCACCAAGTGTATCTGTTCTTGAAACAGATATTGAAGTCGACATTATGGGTCCTGATACACTTCCTGAAAAACCCAACAACCAACACGTTCTGAAACCACTAACGTTCGGGAAATCAGAATCTGGTGTTATAAATGAAGGGGAATACGTTTATTACAAATTTTCAGTAGATGATGACACATGGGGTATAATTAGTCGAGGAGATGCTGAAATTGAAGTGAAGTTAGATTCAGAAGCTAAAGATGGAGATACTGATCTTTATCTTTCACAACACCCGTTATTATTCCCAAACACGCACCAACATGGTTGGTCTAGCCATGACATGGGTTCAAAATGCTTAGTTCTTGGGTCAAAGGACCAGAACCTGGGTGCTGGAACTTACAGTGTCGGTGTATATGGCTTCAAAGGAACCACAAAATACAATATTATAGTATCCGTTCAAGATACTTCCAACTCAAAGGTAGTTCAACAACCTGTCTCTGCAGCTTCTTCTTCATCAACAGCGGATACTGTAGAATGCAGCAATTGCAAACATTATATACCCTTGAGAACCATAGCACTTCATGAGGCGTATTGCAGGAGACATAATGTCGTTTGTCAACATGAGGGATGTGGTATAGTGTTGAGGACTGAAGAGGTTAAGAACCATGTTCATTGCGAGAAATGTGGACTGGCTTTTCATAGTGGAGAGATTGAAAAACATATGAAAGTGTTTCATGAGCCGCTAACTTGTCCGTGTGGGGTCATCCTTGAGAAGACACAGATGGTGCAACACCAGTCTTCAGAGTGTGCCTTACGTCTTGTGACATGTCGATTTTGTGGAGACATGGTTCAAGCTGGTTCTTTAGCTGCTGATACACGGGATCGGTTAAGAGGACTCTCAGAGCATGAGAGTCTTTGTGGGTCCAGAATTGCCCCATGTGACTCTTGTGGTCGGTCTGTCATGTTGAAAGAAATGGACATTCATCAAGTAGCTGTTCATCAGAAGAGCTGA 1683 41.71 MDFELRRAREKLEKEQKDRKEKAKQRLDKERKAKQEATRQREAIEAAQRSRRIHAMEAQLKADQQMEENIFSGRGISFTRVLEAVPFEGSGDKIKLPNSCFNDLSGEGAFEKGPLHFQLSVVDQDKSSTHAGVLEFSAEEGTVGIPPHIWNNLYSKQDPMTPLIEVKYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSENEVLTVKHGVLTYHLRVLELKPSPSVSVLETDIEVDIMGPDTLPEKPNNQHVLKPLTFGKSESGVINEGEYVYYKFSVDDDTWGIISRGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKCLVLGSKDQNLGAGTYSVGVYGFKGTTKYNIIVSVQDTSNSKVVQQPVSAASSSSTADTVECSNCKHYIPLRTIALHEAYCRRHNVVCQHEGCGIVLRTEEVKNHVHCEKCGLAFHSGEIEKHMKVFHEPLTCPCGVILEKTQMVQHQSSECALRLVTCRFCGDMVQAGSLAADTRDRLRGLSEHESLCGSRIAPCDSCGRSVMLKEMDIHQVAVHQKS 560
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08523 560 Pfam TRAFD1-XAF1, zinc finger 523 552 IPR049439 -
Chma7g08523 560 Pfam Ubiquitin fusion degradation protein UFD1 90 248 IPR004854 GO:0006511(InterPro)
Chma7g08523 560 Gene3D - 173 246 - -
Chma7g08523 560 MobiDBLite consensus disorder prediction 1 43 - -
Chma7g08523 560 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 532 IPR004854 GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER)
Chma7g08523 560 Coils Coil 5 50 - -
Chma7g08523 560 Gene3D - 70 171 IPR042299 -
Chma7g08523 560 Gene3D - 268 382 - -
Chma7g08523 560 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 468 520 IPR013083 -
Chma7g08523 560 SUPERFAMILY TRAF domain-like 401 448 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08523 K14016 ubiquitin fusion degradation protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:291095105 Chma7g08523 Chma-Chr7:291287291 proximal