AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08534 ATGACGGGAAAGAAGCGATTTGCTTCGAAATCAGTGATATTGTTATTGGTATTAATTTGTATCGTTGTATTAGTCGGGTTATTATCTCAGTTTAAGCTTCAGTCATCTACTGAATTCAGTTACAATCATGACTTAATCGAGTATCCGATAGTAAAGAAGAATAAGATTGCTTTTTTATTTCTTGTTAGAGATAACCTTCCTCTTGATTTCCTTTGGCATAATTTCTTCAAGAATGCAGATCCTGAGAATTTCACAATCTACATACACTCGAAGCCTGGCATTCTGTTTGACAAGTCAGTTACCAAATCAGCTTTCTTCTACAATCGGCAGTTGAGGAACAGCGTTGAGGTCGGTTGGGGTACACCAACTATGATTGAAGCAGAGAAGCTGTTGTTCAAGGCAGCCCTTGATGATCCAACAAATCAGATATTCATTCTCCTCTCTGACAGCTGTGTCCCTCTGTATAATTTCAGTTATATATACAAATATCTCATGTCATCTCTGAGAAGTTTTGTGGACAGCTTTATAGATGCGACGGATGATCCCAGGGAAAAACGCTATAACCCAGAGATGTCCCCTGACATACCCGAAGACAAATGGCGGAAAGGATCTCAGTGGATCACATTGGTCAGAAGGCATGCAGAGGTGGTTGCATATGATCACGCTGTTTTCCCAATCTTTGAAAAACACTGCAAGCGGCGACCTCTTCTAGACTTGAGCAAGGGAAACGAGTCTCTTATAGAACAACAGCAACACAATTGCATCCCAGATGAACATTATGTGTCAACCTTACTTGCAATGCGTGGATTTGAAGCTGAATTGGAGCGAAGAACATTAACTTATTCTTTATGGAACCAGTCTACTGAACCGATGAATACACAAGCCTGGCATCCTGTAACATTTGTTTTTTCAAGTGCGAGCCAGAAAAATATTCAAGATATTAAGGATATTGATCATGTTTATTTTAAGCCTGAAAACCGGACTGAATGGTGTGGTACTAAATCTGGTAGCGGTCATTGTTATTTATTTGCTAGGAAATTCTCGCGTGGTGCAGCCATGCGACTTTTGACCAATGGGGTAGTTGGTCCCTATGATCCCAGCACATTGTTCTTAGACCCAACATAG 1125 40.44 MTGKKRFASKSVILLLVLICIVVLVGLLSQFKLQSSTEFSYNHDLIEYPIVKKNKIAFLFLVRDNLPLDFLWHNFFKNADPENFTIYIHSKPGILFDKSVTKSAFFYNRQLRNSVEVGWGTPTMIEAEKLLFKAALDDPTNQIFILLSDSCVPLYNFSYIYKYLMSSLRSFVDSFIDATDDPREKRYNPEMSPDIPEDKWRKGSQWITLVRRHAEVVAYDHAVFPIFEKHCKRRPLLDLSKGNESLIEQQQHNCIPDEHYVSTLLAMRGFEAELERRTLTYSLWNQSTEPMNTQAWHPVTFVFSSASQKNIQDIKDIDHVYFKPENRTEWCGTKSGSGHCYLFARKFSRGAAMRLLTNGVVGPYDPSTLFLDPT 374
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08534 374 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 16 356 IPR044174 GO:0016757(InterPro)
Chma7g08534 374 Pfam Core-2-I-Branching enzyme 56 314 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08534 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:3373025 Chma7g08534 Chma-Chr7:291692449 dispersed
Chma Chma-Chr7:3390300 Chma7g08534 Chma-Chr7:291692449 dispersed
Chma Chma-Chr7:291692449 Chma8g04752 Chma-Chr8:171448397 dispersed
Chma Chma-Chr7:291692449 Chma7g08540 Chma-Chr7:291851875 proximal