AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08655 ATGACCGTACGGTCATCGCGATGGAGTCACGGTGTTAATTGGAGGTCTCCGGCTTCGTTGACTTCTCAGATCAGGATTGCGTCTGTTGCGTCTCCTGTGCTTGATCGGTTTCATCGTTCTCTTGCTACTAGTGCCTCTGAGAATGCTTTCAGTGGGATTTTGACTGGTCTCCCTAAACCTGGAGGTGGGGAGTTTGGAAAGTTCTATAGCTTGCCTGCTCTGAATGACCCGAGAGTCGACAAGCTGCCATATTCAATTAGGATACTTCTCGAATCAGCGATCCGTAATTGTGACAATTTCCAAGTCACCAAGGAGGATGTCGAGAAAATCATTGACTGGGAGAAGAGTGCGCCAAAGCAGGTTGAAATTCCGTTCAAGCCTGCTCGTGTTCTGTTACAGGATTTTACTGGTGTGCCAGTTGTGGTAGACCTTGCAGGTATGCGTGATGCTATGAACAATCTTGGTGGGGACTCCCAGAAAATTAATCCTTTGGTTCCTGTGGATCTTGTGGTCGATCATTCAGTTCAAGTTGATGTTGCTAGGACTGAAAATGCTGTAAAAGCAAATATGGAGCTTGAATTTCAGAGAAACCAGGAGAGATTTGCTTTTCTTAAGTGGGGATCTAAAGCTTTCCAAAATATGCTTGTGGTCCCACCAGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGAAGAGTTGTTTTCAACACCGAGGGCATTCTCTACCCTGACAGTGTTGTCGGAACTGATTCGCACACCACTATGATTGACGGGTTAGGAGTTGCTGGCTGGGGAGTTGGAGGAATTGAAGCAGAGGCCGCAATGCTTGGGCAGCCAATGAGCATGGTTTTGCCTGGTGTGGTTGGGTTCAAGCTATCAGGGAAACTTCAGAATGGTGTAACAGCTACTGATTTGGTGTTGACTGTCACCCAAATGTTAAGAAAGCATGGTGTTGTGGGGAAATTTGTTGAATTCCATGGTGAAGGCGTGGGTAAAATCTCACTTGCTGATAGGGCTACTATTGCTAACATGTCTCCCGAGTATGGTGCGACAATGGGTTTCTTCCCAGTGGATCATGTTACTCTACAGTATCTCAAGTTAACTGGACGAAGTGATGATACAGTTGCTATGATAGAAGCATACCTACGTGCAAACAATATGTTTGTCGACTATAATGAGCCACAACAAGAAAGAGTCTACTCATCTTATCTGGAGCTAGACCTTTCAGAAGTAGAACCTTGTCTTTCTGGGCCAAAGAGACCTCATGACCGAGTCACTTTGAAAAACATGAAACAAGATTGGCACTCTTGCCTTGATAATAAAGTGGGATTCAAGGGATTTGAGGTACCAAAGGAGGCACAAGACAAAGTTGCGAAATTTGATTTTCATGGACAGCCTGCAGAACTTAAGCATGGTAGTGTTGTGATCGCTGCTATAACTAGCTGCACAAATACATCAAACCCTAGTGTTATGCTTGGGGCAGGTCTTGTTGCAAAAAAAGCCTGTGAATTGGGCCTACAGGTCAAACCATGGGTTAAAACAAGTCTTGCACCAGGCTCTGGAGTTGTTACAAAATATTTGCTCCAAAGTGGGTTGCAGAAGTATTTGAACGAGCAAGGGTTCAACATTGTTGGATATGGGTGCACGACATGTATTGGCAATTCAGGAGATTTGGATGCATCAGTTGGTGCTGCCATTACTGACAATGATATCATTGCATCAGCAGTTCTCTCTGGTAATCGAAACTTCGAAGGACGTGTTCATGCCTTGATAAGAGAAAACTATATTGCATCACCTCTTTTGGTTGTTGTCTATGCTCTCGCTGGCACAGTTGATATTGACTTTGACAAAGAACCAATTGGAGTTGGAAAAGATGGCAAGGAAGTTTATTTCAGGGATATCTGGCCAAGTACCCAAGAAATTGCAGATGCTGTTCAATCAAGTGTTCTGCCTGACATGTTTAAGAGTACTTATAAATCCATCACTGAGGGAAACCCCATGTGGAATGACCTATCAGTTCCAGAAGCCAAACTATACACATGGGACCAAAATTCTACCTACATTCACGAGCCACCATATTTCAATAACATGACAATGGACCCACCTGGGCCCCACGGCGTGAAGGACGCCTATTGCTTACTCAACTTTGGTGACAGTATCACAACAGATCACATTTCTCCTGCCGGAAGCATTCACAAAGACAGTCCTGCTGCAAAGTTTCTTCTTGACCGTGGTGTTGACCGCAAGGACTTTAACTCTTATGGTAGCCGAAGAGGTAATGATGAAATTATGGCAAGGGGTACTTTTGCCAATATTCGTCTTGTCAACAAGCTCTTGAATGGGGAAGTTGGCCCAAAGACTGTGCATATTCCCTCTGGAGAGAAACTCTCGGTGTTTGATGCAGCATCAAAATACAAGGCAGCTGGCCAGGATACAATTGTTTTGGCTGGAGCAGAGTATGGAAGCGGAAGCTCTAGAGATTGGGCTGCCAAGGGTCCCATGTTATTGGGGGTTAAAGCGGTAATTGCAAAAAGTTTCGAGAGGATCCATCGCAGTAACTTGGTAGGAATGGGCATTATACCACTTTGCTTCAAAGCTGGTGAAGATGCTGACACGCTACAGCTGACTGGTCATGAACGATACACCATTGACCTTCCAAGCAACATTAGTGAGATCCGACCCGGTCAAGATGTCAAGGTCACAACCGACACTGGAAAATCTTTCACGTGTACTGCCCGCTTTGACACTGAGGTGGAATTGGAGTATTTCAACCATGGTGGCATCCTTCCATATGTTATCCGACAACTGGCTGCAAAAAAGTGA 2829 44.89 MTVRSSRWSHGVNWRSPASLTSQIRIASVASPVLDRFHRSLATSASENAFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKSAPKQVEIPFKPARVLLQDFTGVPVVVDLAGMRDAMNNLGGDSQKINPLVPVDLVVDHSVQVDVARTENAVKANMELEFQRNQERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTEGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLQNGVTATDLVLTVTQMLRKHGVVGKFVEFHGEGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQQERVYSSYLELDLSEVEPCLSGPKRPHDRVTLKNMKQDWHSCLDNKVGFKGFEVPKEAQDKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGDLDASVGAAITDNDIIASAVLSGNRNFEGRVHALIRENYIASPLLVVVYALAGTVDIDFDKEPIGVGKDGKEVYFRDIWPSTQEIADAVQSSVLPDMFKSTYKSITEGNPMWNDLSVPEAKLYTWDQNSTYIHEPPYFNNMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLDRGVDRKDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTVHIPSGEKLSVFDAASKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPSNISEIRPGQDVKVTTDTGKSFTCTARFDTEVELEYFNHGGILPYVIRQLAAKK 942
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08655 942 Gene3D Aconitase, domain 3 48 415 IPR015931 -
Chma7g08655 942 ProSitePatterns Aconitase family signature 2. 542 555 IPR018136 -
Chma7g08655 942 SUPERFAMILY Aconitase iron-sulfur domain 62 676 IPR036008 -
Chma7g08655 942 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 46 939 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Chma7g08655 942 PRINTS Aconitase family signature 190 203 IPR001030 -
Chma7g08655 942 PRINTS Aconitase family signature 214 222 IPR001030 -
Chma7g08655 942 PRINTS Aconitase family signature 333 346 IPR001030 -
Chma7g08655 942 PRINTS Aconitase family signature 243 256 IPR001030 -
Chma7g08655 942 PRINTS Aconitase family signature 319 332 IPR001030 -
Chma7g08655 942 PRINTS Aconitase family signature 415 429 IPR001030 -
Chma7g08655 942 PRINTS Aconitase family signature 542 555 IPR001030 -
Chma7g08655 942 PRINTS Aconitase family signature 257 272 IPR001030 -
Chma7g08655 942 PRINTS Aconitase family signature 480 491 IPR001030 -
Chma7g08655 942 Pfam Aconitase family (aconitate hydratase) 108 611 IPR001030 -
Chma7g08655 942 ProSitePatterns Aconitase family signature 1. 476 492 IPR018136 -
Chma7g08655 942 Gene3D - 640 701 - -
Chma7g08655 942 FunFam Aconitate hydratase 48 415 - -
Chma7g08655 942 SUPERFAMILY LeuD-IlvD-like 680 938 - -
Chma7g08655 942 Gene3D Aconitase, domain 3 416 639 IPR015931 -
Chma7g08655 942 Gene3D Aconitase, domain 4 704 940 IPR015928 -
Chma7g08655 942 FunFam Aconitate hydratase 704 940 - -
Chma7g08655 942 CDD AcnA-IRP 129 613 - -
Chma7g08655 942 NCBIfam aconitate hydratase AcnA 66 938 IPR006249 -
Chma7g08655 942 CDD AcnA-IRP-Swivel 717 887 IPR044137 -
Chma7g08655 942 Pfam Aconitase C-terminal domain 740 868 IPR000573 -
Chma7g08655 942 FunFam cytoplasmic aconitate hydratase 416 639 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08655 K01681 aconitate hydratase [EC:4.2.1.3]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr2:28175086 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr2:124271335 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr3:257799023 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr6:52640525 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr6:53848713 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr6:53966909 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr6:54230601 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr6:54231576 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr6:288909205 Chma7g08655 Chma-Chr7:293833167 dispersed
Chma Chma-Chr7:293833167 Chma8g03002 Chma-Chr8:130937080 dispersed