AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08749 ATGGCAGTCCATTGGAGAGTTCATGGTCTCACCTGGCAAAATGCTTTTTCTGAAGAAATTGCTGTTCCTCAGCCAGATCCATTAAATTCCAAGAATCTTCATGAGGGAAAGGAGCTGAGGGGAGCTCCAGTACCTTTGGAACTATCTCCAACCAAAATGTCAACACCAAGTCAGTCAGTTTCATCCTTTTCGGCATCTCCTTTATCTTCTTCCCAAGGCATAATGTCCCCTAACTTTTCAATATCTGAGGAGGGTTCTCCTTTTATGCATCCTGGGTGGAGCAATAAATCGAACAGGGGGTCGCATGGTGGATCTTCTGATAGCTGGTCTATTCCGGCCTTTTCTGAGCTGGTGGCAACTTCTAATAGAGATAGATGGTCTTTTGATAGTGAGTCTTTAAGCTTTAGTCGTGATAGGATTAGCAGATCTAGTGGCAGGGTTTCATCTTCTCCTTCTGTAGACATGCAGACGTGTGGTTTCTGCTCCAGACTTCTAACTGAAAGATCATCTTTTAGCAGCCAGAAAATCGTTGCCACCAATGGGCTTCCTGTTGTTTCTGTTCTGATTTGTGGGCATATTTACCATGCGGAATGTTTAGAGAATATGACACCTGAGGTGAATAAGTATGATCCAGCATGCCCCATTTGTACTTTAGGAGAAAAAAAGGTTCTCAAGTTATCAGAAAAAGCACTAGGAGCTCAAATGGATTTAAAGGGTAAACTCTGCAAAAAATTAAGGAATCGGGTGATGGATGGCGATTCTGTTTTGTTTGACCGCCTTACGAGTGGCAAAGGTCCCAGGATGGGCTCAAGTTCCAGCATGAAGACCTCTACTAGTACAACAAAGCCATTTTTAAGGAGACACTTCTCTTTTGGCTACAAACCAAACCGATCCATGGCAGACAACAGTTCAAGGAAAAAGAGATTTTTCTGGACAAAATCAAGCAAGGAGTGA 954 43.08 MAVHWRVHGLTWQNAFSEEIAVPQPDPLNSKNLHEGKELRGAPVPLELSPTKMSTPSQSVSSFSASPLSSSQGIMSPNFSISEEGSPFMHPGWSNKSNRGSHGGSSDSWSIPAFSELVATSNRDRWSFDSESLSFSRDRISRSSGRVSSSPSVDMQTCGFCSRLLTERSSFSSQKIVATNGLPVVSVLICGHIYHAECLENMTPEVNKYDPACPICTLGEKKVLKLSEKALGAQMDLKGKLCKKLRNRVMDGDSVLFDRLTSGKGPRMGSSSSMKTSTSTTKPFLRRHFSFGYKPNRSMADNSSRKKRFFWTKSSKE 317
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08749 317 ProSiteProfiles Zinc finger RING-type profile. 158 217 IPR001841 -
Chma7g08749 317 MobiDBLite consensus disorder prediction 41 105 - -
Chma7g08749 317 MobiDBLite consensus disorder prediction 300 317 - -
Chma7g08749 317 MobiDBLite consensus disorder prediction 91 105 - -
Chma7g08749 317 MobiDBLite consensus disorder prediction 50 83 - -
Chma7g08749 317 PANTHER EXPRESSED PROTEIN 54 222 - -
Chma7g08749 317 MobiDBLite consensus disorder prediction 265 280 - -
Chma7g08749 317 SUPERFAMILY RING-U-box 151 217 - -
Chma7g08749 317 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 138 218 IPR013083 -
Chma7g08749 317 MobiDBLite consensus disorder prediction 296 317 - -
Chma7g08749 317 MobiDBLite consensus disorder prediction 261 280 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08749 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:296373522 Chma7g08749 Chma-Chr7:296423720 proximal