AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g08776 ATGGAAAAGGTTCCAGTTGCTTTCTTTGCGATTCTTATGCTTGTCTTCGTTCTTGCTATCTCAGAAATCACGTCCGTCAAAGGGAAAATATGTGAAAAGCCGAGTAAGACTTGGTTTGGAAACTGCAAAGACTCAGACAAGTGTGACAAGCAGTGCATCGATTGGGAGGGTGCACAACATGGAGCTTGTCACCAACGTGAAGCCAAATACATGTGCTTTTGCTACTTCGAAGACTGTAAATCAAGCAACAAACCAAAGCCGCCTTCTCCTGGAAAGCCGACTCCTCCAGGAGGCAGTCAGCCGACACCTCCAGGAGGCAGTCAGCCGACACCTCCAGGAGGCACGCAACCAGCTCCACCTCCACCTCCACCCGAGGGTGGACAACCTGCACCACCCGGTGGTGGACAACCTTCTCCCCCGGGAGGAGAGCAACCTACTCCACCTGAAGGAGGGCAGCCGGCTCCTCCTGGAGGTGGACAACCTGCTCCTCCAGATGGTGGGCAACCAGCTCCACCAGGAGCTGGTCAGCCAACTCCACCAGCTGATGACGGACAACCAGCTCCTCCTCCAGGATGCGCGAAACAAGATATAGATAAGCTAATAGCTGAAGCTCTTGCACAATACAAGGCTCAATATGAGGAAGTTTCACGTCGATGA 657 53.12 MEKVPVAFFAILMLVFVLAISEITSVKGKICEKPSKTWFGNCKDSDKCDKQCIDWEGAQHGACHQREAKYMCFCYFEDCKSSNKPKPPSPGKPTPPGGSQPTPPGGSQPTPPGGTQPAPPPPPPEGGQPAPPGGGQPSPPGGEQPTPPEGGQPAPPGGGQPAPPDGGQPAPPGAGQPTPPADDGQPAPPPGCAKQDIDKLIAEALAQYKAQYEEVSRR 218
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g08776 218 Pfam Gamma-thionin family 29 76 - -
Chma7g08776 218 ProSitePatterns Gamma-thionins family signature. 29 52 IPR008176 GO:0006952(InterPro)
Chma7g08776 218 PANTHER DEFENSIN-LIKE PROTEIN 1 1 76 - GO:0006952(PANTHER)
Chma7g08776 218 MobiDBLite consensus disorder prediction 83 198 - -
Chma7g08776 218 SMART gth-4 30 76 IPR003614 GO:0006952(InterPro)
Chma7g08776 218 MobiDBLite consensus disorder prediction 86 187 - -
Chma7g08776 218 Gene3D - 30 79 IPR036574 -
Chma7g08776 218 SUPERFAMILY Scorpion toxin-like 29 76 IPR036574 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g08776 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:297114367 Chma7g08776 Chma-Chr7:297123839 dispersed
Chma Chma-Chr7:297123839 Chma7g08898 Chma-Chr7:300078549 dispersed
Chma Chma-Chr7:297123839 Chma7g08778 Chma-Chr7:297181101 proximal
Chma Chma-Chr7:297120994 Chma7g08776 Chma-Chr7:297123839 tandem
Chma Chma-Chr7:297123839 Chma7g08777 Chma-Chr7:297148097 tandem
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chma7g08894 . 3 78 Plant Defensins gene family AT1G19610 53.947 9.34e-26 90.5
Chma5g09935 . 1 78 Plant Defensins gene family AT1G19610 51.282 3.76e-26 91.3
Chma7g08896 . 3 78 Plant Defensins gene family AT1G19610 53.947 5.33e-26 90.5
Chma3g06679 . 26 70 Plant Defensins gene family AT2G02130 66.667 1.38e-16 69.7
Chma7g08893 . 3 78 Plant Defensins gene family AT1G19610 53.947 5.33e-26 90.5
Chma9g05210 . 22 78 Plant Defensins gene family AT1G19610 50.877 5.28e-13 59.3
Chma5g09927 . 1 78 Plant Defensins gene family AT1G19610 51.282 1.19e-23 91.7
Chma7g08904 . 7 78 Plant Defensins gene family AT1G19610 41.667 1.23e-12 60.5
Chma7g08897 . 3 68 Plant Defensins gene family AT1G19610 43.939 8.08e-15 61.2
Chma7g08907 . 13 78 Plant Defensins gene family AT1G19610 46.97 1.75e-16 67.4
Chma8g06718 . 26 67 Plant Defensins gene family AT2G02130 61.905 2.89e-12 57.4
Chma3g06742 . 26 77 Plant Defensins gene family AT2G02130 63.462 2.44e-20 76.3
Chma4g01322 . 7 77 Plant Defensins gene family AT2G02120 35.211 5.60e-12 53.9
Chma7g08778 . 13 78 Plant Defensins gene family AT1G19610 56.061 5.32e-24 86.3
Chma7g08898 . 3 78 Plant Defensins gene family AT1G19610 55.263 1.07e-25 91.3
Chma7g08774 . 1 78 Plant Defensins gene family AT1G19610 42.308 1.40e-18 73.6
Chma6g05823 . 23 78 Plant Defensins gene family AT1G19610 55.357 1.32e-19 73.9
Chma7g08775 . 1 78 Plant Defensins gene family AT1G19610 43.59 8.30e-20 76.6
Chma6g02480 . 5 78 Plant Defensins gene family AT1G19610 50.649 1.43e-27 93.6
Chma7g08899 . 3 78 Plant Defensins gene family AT1G19610 53.947 1.02e-25 90.1
Chma7g08776 . 7 77 Plant Defensins gene family AT1G19610 47.887 1.27e-18 75.5