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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g09016 ATGTCGATCCTAGGTTCTAATATCCCTAGCGAGGTTGGCTTGAAGTTGCTTCTTTGCCCACTTGGTTCCAACATTATCCTAAAAACAGCATGCTGTTCTGTGGGAGTTATATTACCTGTTTACTCTACTTTTAAGGCGATTGAGACGAATAACAGATCTGATCAGCAAAAGATGCTTTTATACTGGGCAGCATATGGGACTTTTAGCATTGCAGAAACATTTGCCGACAAAGTTATATCATGGGTTCCACTTTACCATCATATGAAGTTTGCGTTTCTTGTTTGGCTTCAGCTTCCCACCACTAATGGTGCTAAACTGATATACATGAGTCATATACGTCCTTTTCTTTTGAGGCATCAAGGCAACCTCGATCACATTGTGGCGTTTTTGTACAACGAAACGGGTAAATTCGTTAGCGCCCACGAAAGTGAATTTCTATTCATCAAGGCAATCGTGATGAAGATTCTGATATCAGCAAAACATTTTGTCAACGATAGCAGTCAACCCATCCCACCGGTCCCACCACCAGAAGGAAGAGCAATCACAGACGTAAATGAACAAGCAGAGAGCATTAACTCTGATGAAGAGGATGATGATGGTTTTGTAACTGTTCCTGCAACTTAA 624 41.35 MSILGSNIPSEVGLKLLLCPLGSNIILKTACCSVGVILPVYSTFKAIETNNRSDQQKMLLYWAAYGTFSIAETFADKVISWVPLYHHMKFAFLVWLQLPTTNGAKLIYMSHIRPFLLRHQGNLDHIVAFLYNETGKFVSAHESEFLFIKAIVMKILISAKHFVNDSSQPIPPVPPPEGRAITDVNEQAESINSDEEDDDGFVTVPAT 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g09016 207 PANTHER HVA22-LIKE PROTEINS 35 130 IPR004345 -
Chma7g09016 207 MobiDBLite consensus disorder prediction 167 207 - -
Chma7g09016 207 Pfam TB2-DP1, HVA22 family 39 115 IPR004345 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g09016 K17279 receptor expression-enhancing protein 5/6
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr7:303627597 Chma7g09016 Chma-Chr7:303819897 dispersed
Chma Chma-Chr7:303819897 Chma9g06609 Chma-Chr9:211598234 dispersed