AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g09091 ATGTGGTTGAATGTTCCTATAGCAATACTACTAGTATCAGGTGTTCATTTTTTGTTAAGCGAAGTTGAATTCCGTTGGAAGACAAGAAAGCCTATTGGGCAATCGTATTTAGCGCATTTAGAGAAGAAACAATTGTCTGTAAATGATTCTCGTCTTACCACATTACCTCCTCCACCTAAATGGAAGAGGAAGATTGATTCTCCGGTAGTCGAGGCTGCTATGGATGATTTTGTTAATAAGATTTTGCAAGAATTTGTTCTTGATATGTGGTATTCGGATATAACGCCTGATAAGGAAGCACCACAGCTTATACATGGGATTATTATGGATATTCTTGCCGAGATTTCCACGAGAGCGAAAGACATAAACCTCGTTGACTTGCTAACAAGAGATGTAGTTGATCTAGTAGGTGATCACTTAGAGCTTTTCCGGAAAAATCAGGCTGCTATTGGCAGGGACGTTATGGTGACACTTTCTTCCGAAGAAAGAGATGAAAGGTTGAAACGTCATCTTATGGCTTCTAAGGAGCTTCATCCGGCTTGTATATCTTCTGAGAGCGAGTACAAGTTTCTTAAGCGAGTGATGGGGGCAGTTTTGGCTGCTGTCCTAAGACCACGAGAAAAGCAATGCCCTATAGTTCGATGCATTACACGAGAGCTTTTAACATGCTTGGTAATGGAACCTGTAATGAAATTTGCAAGTCCCGGGCAAATCAATGAGTTAATCGAGGGTATTTTCCTCGCCAACAATAACAAGGGAGACAACGAAGCAGGAGATGATCAGTCAACTAATGTCACTGATCAACCTCAGAATCAACCCGTTGCTATAAACCATGAAAAGTCTCAAGAGTCTACTTCCTTGAGAAGCGGCTCTTTTCATAATCCAAAGAATGATACACCTAATGACCAAAAGGAACCGATCTTAAACCCACCTGGCACTATTGCTAGTGATCCGGTTCAAGATAAATCAGTGCAGCCACGGTCCTCGAAATGGGCCCGGGTTCTTGAGGCAGCAACCCAAAGAAGGACCGAAGTTCTTCAGCCAGAAAACCTTGAAGATATGTGGACCAAAGGAAGAAACTATAAGAAAAAAGCTCAGAAGAAAGCTGCTCAAGGACTTCAACCTTCTATGGTAGATGGTTCTGCATTACCTGGTTTAAATGAAAATTCTAATGACCAACCACAAGAGCAAAATCTTGACGCTGATCAAAGCAAGACGTCCGATCTTTCTGAGTTAGCTGATGAAAGTTCTAATTTTGTTAGTGAAAGTAAAGCTACGTCGGAAAAATCAAATAGTTCATCTGATTTGAACATTCAAAACCAAAGTGAAACTGCACGTCCAACCCAAGCTGGTGGTTCCGTCATCTCAGAGTTTTACAGTGCGAATGTCAGTGGAGACAATGATTTACATAATTTTAATGTTACTTCTGATAAAGCCACTCATACAGAAGGGCCTGTCCCCAAGCTTAGGTGTCGGGTTCTAGGAGCATACTTTGAGACTCTTGACTCAAAATCATTTGCAGTCTATTCGATTGGTGTGACAGATGTTGATAACAACACTTGGTTTGTGAAAAGAAGATATAGGAATTTTGAGAGATTGCACCGCCATCTTAAGGACATTCCCAATTATACTTCACAGTTACCTCCTAAAAGGATATTTTCGTCTAGTACAGAGGATGCGTTTGTTCGTCAACGCTGTATACAGCTTGATAGATATCTGCAAGACCTATTGTCTATACCTAATATCGCTGAGCAACATGAAGTATGGGACTTTTTGAGCTTGTCTTCGAAGAGTTACTCTTTTGGAAGGTCATCGTCGGTAGTAAGAACCTTAGCAGTCAATGTGGATGATGCTATGGATGATATTGTACGTCAATTCAAAGGAGTTTCAGATGGGCTAATGCGAAAAGTTGCTGGCCCGGTTTCCCCTACTGACTCATCTGCTTCAGTATCTAACAGAAAAATGTCATTTAAGGGTGATGAAGCAATTGACTCCGTCACAAAGCGAACTACCTCGGATGTTGGTAACAGTTTTTCTAACAATGAGGATGGTGAAATAGATGCAACACTTCACTATGAGGAAGTGGGGTTCGTTGCACAAGCTAATGAGCGAAATTTGGACAAGTTGAACTCAAAAGGATTTGCTAAAAGTGATGAACAGAATAAGAATATTGCAGAGGCGCGATCTGAAATACTCGGTATGGGAGCTAATCTTGCTTCAGCGCCTGGTCTCAAGGAAGATCCACTTGGTGTCCCAGCAGAGTGGACACCGCCTAATGTAAGTGTTCCATTGCTAAATTTAGTGGACACGATATTTCAACTTAACAGAAGAGGCTGGCTAAGACGACAGGTGTTTTGGATGTCGAAGCAGATCTTACAGCTAATGATGGAAGATGCTATTGATGATTGGCTTGTAAGGCAAATCCATTGGCTCAGGAGAGAGAATGTTGTTGCTCAAGGGGTTCGTTATCTCCAAGATGTTCTTTGGCCTGAAGGCACATTTTTTCTGAAGTTGAGAGCAAATCAAGCAGATTCTTCTCAATCAAATGAAGGTTCCGGCAAGACCTCATCTGGCAATAAAAATACTAAACAAGGGTCATTTGAAGAGCAGCTTCAGGCTGTCCGTAGAGCCAGTGAGATCAAGAAGATGATATTCAAGGGAGCACCAACTACTTTAGTCAGCTTAATTGGAAATAAGCAATACAAGCGATCTGCTAAAGATATATATTATTTTCTCCAGTCTGCAGTGTGTTTAAAGCAACTTGGGTATGGTTTACTTGAACTTATACTCATAACGGTTTTCCCAGAGCTTCAAGAAGTCATAATCAATATTCATGAGAAGAAGAAGAAAGACCCGAAGGTGTAG 2865 41.19 MWLNVPIAILLVSGVHFLLSEVEFRWKTRKPIGQSYLAHLEKKQLSVNDSRLTTLPPPPKWKRKIDSPVVEAAMDDFVNKILQEFVLDMWYSDITPDKEAPQLIHGIIMDILAEISTRAKDINLVDLLTRDVVDLVGDHLELFRKNQAAIGRDVMVTLSSEERDERLKRHLMASKELHPACISSESEYKFLKRVMGAVLAAVLRPREKQCPIVRCITRELLTCLVMEPVMKFASPGQINELIEGIFLANNNKGDNEAGDDQSTNVTDQPQNQPVAINHEKSQESTSLRSGSFHNPKNDTPNDQKEPILNPPGTIASDPVQDKSVQPRSSKWARVLEAATQRRTEVLQPENLEDMWTKGRNYKKKAQKKAAQGLQPSMVDGSALPGLNENSNDQPQEQNLDADQSKTSDLSELADESSNFVSESKATSEKSNSSSDLNIQNQSETARPTQAGGSVISEFYSANVSGDNDLHNFNVTSDKATHTEGPVPKLRCRVLGAYFETLDSKSFAVYSIGVTDVDNNTWFVKRRYRNFERLHRHLKDIPNYTSQLPPKRIFSSSTEDAFVRQRCIQLDRYLQDLLSIPNIAEQHEVWDFLSLSSKSYSFGRSSSVVRTLAVNVDDAMDDIVRQFKGVSDGLMRKVAGPVSPTDSSASVSNRKMSFKGDEAIDSVTKRTTSDVGNSFSNNEDGEIDATLHYEEVGFVAQANERNLDKLNSKGFAKSDEQNKNIAEARSEILGMGANLASAPGLKEDPLGVPAEWTPPNVSVPLLNLVDTIFQLNRRGWLRRQVFWMSKQILQLMMEDAIDDWLVRQIHWLRRENVVAQGVRYLQDVLWPEGTFFLKLRANQADSSQSNEGSGKTSSGNKNTKQGSFEEQLQAVRRASEIKKMIFKGAPTTLVSLIGNKQYKRSAKDIYYFLQSAVCLKQLGYGLLELILITVFPELQEVIINIHEKKKKDPKV 954
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g09091 954 PANTHER PX SERINE-THREONINE KINASE PXK 1 949 IPR051837 -
Chma7g09091 954 SMART PX-2 485 595 IPR001683 GO:0035091(InterPro)
Chma7g09091 954 ProSiteProfiles PX domain profile. 487 599 IPR001683 GO:0035091(InterPro)
Chma7g09091 954 MobiDBLite consensus disorder prediction 277 306 - -
Chma7g09091 954 MobiDBLite consensus disorder prediction 845 867 - -
Chma7g09091 954 Pfam PX domain 517 593 IPR001683 GO:0035091(InterPro)
Chma7g09091 954 Pfam Sorting nexin C terminal 779 914 IPR013937 -
Chma7g09091 954 SMART PXA-3 67 250 IPR003114 -
Chma7g09091 954 MobiDBLite consensus disorder prediction 277 328 - -
Chma7g09091 954 Pfam PXA domain 67 243 IPR003114 -
Chma7g09091 954 MobiDBLite consensus disorder prediction 357 451 - -
Chma7g09091 954 ProSiteProfiles PXA domain profile. 67 250 IPR003114 -
Chma7g09091 954 MobiDBLite consensus disorder prediction 383 451 - -
Chma7g09091 954 Gene3D - 491 603 IPR036871 GO:0035091(InterPro)
Chma7g09091 954 CDD PX-SNX19-like-plant 489 594 - -
Chma7g09091 954 SUPERFAMILY PX domain 490 596 IPR036871 GO:0035091(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g09091 K17925 sorting nexin-13
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Event-related genes

Select Gene_1 Gene_2 Event_name
43923 Chma5g06315 Chma7g09091
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr4:309276721 Chma7g09091 Chma-Chr7:305843147 dispersed
Chma Chma-Chr5:230042264 Chma7g09091 Chma-Chr7:305843147 wgd