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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g09096 ATGCTGACTGTGGGACCGGGTATGGATTTGCCAATTATGCATGATAGTGATAGGTATGAACTTGTTAGGGATATTGGGTCTGGTAACTTTGGTATTGCTAGGTTGATGAGAGATAAGCAAACTAATGAGCTAGTTGCGGTTAAGTATATCGAGCGAGGCGATAAGATAGATGAGAATGTTCAAAGGGAAATTATTAATCACAGGTCATTAAGGCATCCAAATATCGTTAGATTCAAAGAGGTTATTTTAACGCCAACACATCTGGCGATCGTTATGGAATATGCATCTGGAGGAGAGTTATTTGAGCGGATATGTAATGCTGGGCGGTTTCCAGAAGATGAGGCACGGTTCTTCTTTCAGCAACTCATTTCGGGCGTTAGCTACTGTCATAATATGCAAGTATGCCATCGAGACTTGAAACTGGAGAACACGCTACTAGATGGCAGTCCTGCTCCTCGGCTCAAAATTTGCGATTTTGGCTACTCTAAGTCCTCTGTGCTGCATTCACAACCAAAATCTACTGTTGGAACGCCGGCCTATATTGCTCCTGAAGTCTTGCTGAAGAAAGAATACGATGGCAAGATTGCAGACGTATGGTCTTGTGGTGTAACATTATATGTAATGCTTGTGGGAGCTTACCCTTTTGAGGATCCGGAAGAGCCTAAGAATTTTCGCAAGACCATACAGCGAATTCTGAATGTCCAGTACTCAATTCCATCCTATGTTCATATATCCCCCGAGTGCCGCCACTTGATCTCCAGAATATTTGTTGCAGATCCTGCTAAGCGGATAACCATGGACGAGATAAAAAACCACGAATGGTTTATAAAGAACCTACCAGCAGATCTCACAAAAGACGATGCAATGGACCAATTTGGTGGCCCCGATCAGCCGACTCAGACTGTCGATGAAATCATGCAGATAATCGCTGAAGCCACCATCCCTCCTGTTGGCGCCAATAATCTGAACCAGTATCTTACTGGTAGTCTGGATATGGACGATGACATGGATGAGGATCTTTTGAGTGATTGCGATCTTGATATTGATAGCAGTGGGGAGATTGTATACGCTATGTGA 1077 43.64 MLTVGPGMDLPIMHDSDRYELVRDIGSGNFGIARLMRDKQTNELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFPEDEARFFFQQLISGVSYCHNMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIQRILNVQYSIPSYVHISPECRHLISRIFVADPAKRITMDEIKNHEWFIKNLPADLTKDDAMDQFGGPDQPTQTVDEIMQIIAEATIPPVGANNLNQYLTGSLDMDDDMDEDLLSDCDLDIDSSGEIVYAM 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g09096 358 FunFam Serine-threonine-protein kinase SRK2E 95 283 - -
Chma7g09096 358 Pfam Protein kinase domain 19 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chma7g09096 358 ProSiteProfiles Protein kinase domain profile. 19 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chma7g09096 358 CDD STKc-SnRK2-3 18 274 - -
Chma7g09096 358 SUPERFAMILY Protein kinase-like (PK-like) 12 285 IPR011009 -
Chma7g09096 358 ProSitePatterns Serine-Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Chma7g09096 358 FunFam Serine-threonine-protein kinase SRK2E 10 94 - -
Chma7g09096 358 PANTHER MAP-MICROTUBULE AFFINITY-REGULATING KINASE 17 281 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Chma7g09096 358 Gene3D Phosphorylase Kinase; domain 1 3 94 - -
Chma7g09096 358 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
Chma7g09096 358 SMART serkin-6 19 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chma7g09096 358 Gene3D Transferase(Phosphotransferase) domain 1 95 283 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g09096 K14498 serine/threonine-protein kinase SRK2 [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr1:77925932 Chma7g09096 Chma-Chr7:305900602 dispersed
Chma Chma-Chr3:130238634 Chma7g09096 Chma-Chr7:305900602 dispersed
Chma Chma-Chr3:255097459 Chma7g09096 Chma-Chr7:305900602 dispersed
Chma Chma-Chr5:66333652 Chma7g09096 Chma-Chr7:305900602 dispersed
Chma Chma-Chr6:141817007 Chma7g09096 Chma-Chr7:305900602 dispersed
Chma Chma-Chr7:238160945 Chma7g09096 Chma-Chr7:305900602 dispersed
Chma Chma-Chr7:305900602 Chma8g06861 Chma-Chr8:242723419 dispersed
Chma Chma-Chr7:305900602 Chma4g05379 Chma-Chr4:193763941 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chma7g09096 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 41.042 3.49e-68 219.0
Chma6g08071 . 11 259 CBL-interacting serine-threonine protein kinases family AT5G57630 26.367 5.51e-12 64.7
Chma9g03721 . 136 180 CBL-interacting serine-threonine protein kinases family AT5G35410 84.444 1.34e-19 84.3
Chma7g04250 . 97 282 CBL-interacting serine-threonine protein kinases family AT4G18700 38.743 9.88e-34 126.0
Chma5g06017 . 218 270 CBL-interacting serine-threonine protein kinases family AT5G45820 50.943 2.94e-13 64.3
Chma3g05204 . 281 338 CBL-interacting serine-threonine protein kinases family AT2G26980 48.276 1.61e-11 57.4
Chma7g00244 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 58.296 1.81e-176 499.0
Chma5g01756 . 16 438 CBL-interacting serine-threonine protein kinases family AT4G30960 74.824 0.0 627.0
Chma7g01240 . 15 455 CBL-interacting serine-threonine protein kinases family AT4G18700 70.246 0.0 640.0
Chma7g09037 . 28 188 CBL-interacting serine-threonine protein kinases family AT5G01810 35.758 3.04e-20 84.7
Chma6g05783 . 44 109 CBL-interacting serine-threonine protein kinases family AT5G35410 42.647 2.21e-11 58.2
Chma0g00592 . 42 186 CBL-interacting serine-threonine protein kinases family AT4G24400 48.0 3.92e-40 144.0
Chma2g04890 . 54 270 CBL-interacting serine-threonine protein kinases family AT2G26980 52.535 3.30e-78 246.0
Chma5g00879 . 15 282 CBL-interacting serine-threonine protein kinases family AT3G17510 69.963 4.39e-140 401.0
Chma5g00884 . 181 282 CBL-interacting serine-threonine protein kinases family AT3G17510 73.077 3.51e-53 171.0
Chma2g01857 . 24 207 CBL-interacting serine-threonine protein kinases family AT4G14580 30.978 5.36e-19 81.3
Chma7g01239 . 2 421 CBL-interacting serine-threonine protein kinases family AT5G45820 57.206 0.0 527.0
Chma6g05353 . 131 254 CBL-interacting serine-threonine protein kinases family AT5G10930 44.118 3.59e-26 103.0
Chma8g06981 . 165 301 CBL-interacting serine-threonine protein kinases family AT4G24400 36.943 6.29e-22 95.1
Chma8g07121 . 15 444 CBL-interacting serine-threonine protein kinases family AT3G17510 67.442 0.0 597.0
Chma5g03943 . 1 432 CBL-interacting serine-threonine protein kinases family AT2G30360 59.909 0.0 530.0
Chma8g03962 . 62 190 CBL-interacting serine-threonine protein kinases family AT5G01810 31.973 3.33e-11 60.5
Chma1g08275 . 179 282 CBL-interacting serine-threonine protein kinases family AT2G25090 43.86 2.51e-25 100.0
Chma9g05851 . 9 473 CBL-interacting serine-threonine protein kinases family AT4G18700 73.118 0.0 697.0
Chma8g01861 . 66 272 CBL-interacting serine-threonine protein kinases family AT2G26980 43.961 4.58e-58 189.0
Chma8g06861 . 42 318 CBL-interacting serine-threonine protein kinases family AT5G25110 43.448 3.19e-70 225.0
Chma9g08526 . 1 454 CBL-interacting serine-threonine protein kinases family AT5G58380 67.033 0.0 627.0
Chma5g08110 ACH 147 279 CBL-interacting serine-threonine protein kinases family AT5G10930 30.37 5.86e-13 61.6
Chma4g02733 . 1 450 CBL-interacting serine-threonine protein kinases family AT5G58380 59.692 0.0 551.0
Chma1g05694 . 15 472 CBL-interacting serine-threonine protein kinases family AT4G18700 75.488 0.0 718.0
Chma6g08899 . 14 174 CBL-interacting serine-threonine protein kinases family AT2G26980 39.13 1.32e-29 111.0
Chma2g04244 . 111 141 CBL-interacting serine-threonine protein kinases family AT3G17510 74.194 8.57e-12 59.3
Chma8g03958 . 8 272 CBL-interacting serine-threonine protein kinases family AT4G24400 38.768 2.73e-51 174.0
Chma9g03722 . 129 180 CBL-interacting serine-threonine protein kinases family AT5G35410 88.462 1.13e-27 102.0
Chma5g06092 . 43 116 CBL-interacting serine-threonine protein kinases family AT5G35410 44.737 6.05e-15 68.2
Chma9g09263 . 200 278 CBL-interacting serine-threonine protein kinases family AT5G58380 58.228 1.18e-23 94.7
Chma3g06246 . 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.0 2.58e-55 183.0
Chma8g06919 . 128 177 CBL-interacting serine-threonine protein kinases family AT4G24400 52.0 6.83e-09 48.9
Chma5g00885 . 15 172 CBL-interacting serine-threonine protein kinases family AT3G17510 67.702 4.48e-70 216.0
Chma6g05916 . 47 238 CBL-interacting serine-threonine protein kinases family AT5G35410 42.439 1.50e-45 159.0
Chma1g07384 . 30 317 CBL-interacting serine-threonine protein kinases family AT1G30270 39.032 5.45e-66 214.0
Chma7g00104 . 11 216 CBL-interacting serine-threonine protein kinases family AT5G35410 32.85 5.16e-23 97.8
Chma8g09260 . 5 278 CBL-interacting serine-threonine protein kinases family AT2G30360 29.893 8.68e-44 157.0
Chma5g08369 . 7 439 CBL-interacting serine-threonine protein kinases family AT4G30960 69.425 0.0 590.0
Chma7g04248 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 37.091 3.62e-54 180.0
Chma9g08317 . 102 258 CBL-interacting serine-threonine protein kinases family AT5G57630 26.455 3.04e-07 52.0
Chma7g04252 . 88 285 CBL-interacting serine-threonine protein kinases family AT2G30360 34.951 3.60e-34 126.0
Chma8g05436 . 105 182 CBL-interacting serine-threonine protein kinases family AT5G01810 44.872 7.81e-12 63.9
Chma8g06336 . 9 262 CBL-interacting serine-threonine protein kinases family AT4G24400 51.575 4.11e-92 286.0
Chma8g01519 . 312 432 CBL-interacting serine-threonine protein kinases family AT5G07070 36.885 9.41e-25 95.9
Chma4g08388 . 31 468 CBL-interacting serine-threonine protein kinases family AT5G25110 69.545 0.0 642.0
Chma8g00288 . 28 285 CBL-interacting serine-threonine protein kinases family AT1G30270 37.308 1.89e-60 197.0
Chma6g02379 . 64 282 CBL-interacting serine-threonine protein kinases family AT3G17510 52.941 3.98e-77 237.0
Chma9g06318 . 1 445 CBL-interacting serine-threonine protein kinases family AT4G24400 74.497 0.0 684.0
Chma7g08194 . 18 273 CBL-interacting serine-threonine protein kinases family AT5G10930 34.47 8.49e-47 165.0
Chma4g06780 . 281 338 CBL-interacting serine-threonine protein kinases family AT2G26980 48.276 7.44e-11 57.0
Chma7g05429 . 188 303 CBL-interacting serine-threonine protein kinases family AT4G24400 36.029 4.39e-17 78.6
Chma5g01343 . 24 332 CBL-interacting serine-threonine protein kinases family AT5G35410 69.579 5.92e-165 465.0
Chma7g07023 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 37.874 1.21e-60 199.0
Chma4g08393 . 28 136 CBL-interacting serine-threonine protein kinases family AT5G25110 31.193 2.12e-15 71.2
Chma3g03255 . 55 270 CBL-interacting serine-threonine protein kinases family AT2G26980 52.778 4.46e-78 246.0
Chma2g00943 . 128 177 CBL-interacting serine-threonine protein kinases family AT4G24400 52.0 6.83e-09 48.9
Chma8g00285 . 15 55 CBL-interacting serine-threonine protein kinases family AT4G18700 63.415 7.73e-11 59.7
Chma4g08391 . 2 105 CBL-interacting serine-threonine protein kinases family AT5G58380 33.654 2.25e-12 61.2
Chma5g00903 . 15 282 CBL-interacting serine-threonine protein kinases family AT3G17510 69.963 4.39e-140 401.0
Chma1g10805 . 11 265 CBL-interacting serine-threonine protein kinases family AT5G35410 38.672 1.77e-46 162.0
Chma4g09242 . 84 178 CBL-interacting serine-threonine protein kinases family AT4G24400 42.105 7.78e-12 63.9
Chma5g03952 . 1 452 CBL-interacting serine-threonine protein kinases family AT5G58380 62.252 0.0 585.0
Chma8g07240 . 57 117 CBL-interacting serine-threonine protein kinases family AT5G35410 51.613 3.61e-13 68.2
Chma2g01476 . 28 461 CBL-interacting serine-threonine protein kinases family AT1G30270 71.034 0.0 645.0
Chma7g04242 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 37.091 7.16e-51 182.0
Chma1g03363 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 41.754 1.31e-67 217.0
Chma7g06171 . 18 441 CBL-interacting serine-threonine protein kinases family AT4G30960 73.721 0.0 619.0
Chma9g08525 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 60.563 0.0 530.0
Chma4g05379 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 39.414 8.49e-67 215.0
Chma4g02069 . 91 130 CBL-interacting serine-threonine protein kinases family AT2G26980 52.5 1.15e-08 51.6
Chma8g01520 . 1 417 CBL-interacting serine-threonine protein kinases family AT5G01810 56.295 8.57e-174 491.0
Chma9g09905 . 135 220 CBL-interacting serine-threonine protein kinases family AT5G57630 39.08 7.06e-10 56.6
Chma5g02676 . 297 335 CBL-interacting serine-threonine protein kinases family AT2G26980 66.667 1.16e-09 57.4
Chma3g07419 . 30 326 CBL-interacting serine-threonine protein kinases family AT1G30270 40.798 7.60e-70 224.0
Chma2g04882 . 14 271 CBL-interacting serine-threonine protein kinases family AT2G26980 47.49 1.20e-79 249.0
Chma0g01808 . 33 278 CBL-interacting serine-threonine protein kinases family AT5G45810 29.304 3.75e-18 85.9
Chma8g06863 . 19 306 CBL-interacting serine-threonine protein kinases family AT1G01140 37.374 6.93e-51 178.0
Chma1g02220 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G10930 63.17 0.0 578.0
Chma7g00258 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 58.52 1.30e-177 502.0
Chma7g01485 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 84.651 0.0 769.0
Chma8g01525 . 1 240 CBL-interacting serine-threonine protein kinases family AT5G45820 75.417 2.36e-136 390.0
Chma0g01866 . 38 468 CBL-interacting serine-threonine protein kinases family AT5G25110 61.851 0.0 570.0
Chma5g00880 . 60 281 CBL-interacting serine-threonine protein kinases family AT1G48260 60.338 1.57e-100 298.0
Chma9g05069 . 2 447 CBL-interacting serine-threonine protein kinases family AT1G01140 73.094 0.0 698.0
Chma8g00011 . 49 106 CBL-interacting serine-threonine protein kinases family AT5G35410 38.333 7.62e-06 45.8
Chma6g07099 . 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.714 6.10e-56 185.0
Chma1g03375 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 41.754 1.89e-67 216.0
Chma8g00216 . 286 349 CBL-interacting serine-threonine protein kinases family AT1G01140 60.938 2.08e-15 70.9
Chma5g02553 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 41.071 6.05e-64 206.0
Chma1g08274 . 13 113 CBL-interacting serine-threonine protein kinases family AT2G26980 40.594 9.58e-22 85.5
Chma5g08114 . 34 279 CBL-interacting serine-threonine protein kinases family AT5G10930 34.538 1.69e-44 154.0
Chma4g07209 . 38 106 CBL-interacting serine-threonine protein kinases family AT2G25090 37.838 2.42e-08 48.5
Chma5g08111 . 49 114 CBL-interacting serine-threonine protein kinases family AT5G45810 33.333 3.12e-09 50.8
Chma0g02082 . 11 265 CBL-interacting serine-threonine protein kinases family AT5G35410 38.281 6.30e-45 161.0
Chma6g09379 . 38 468 CBL-interacting serine-threonine protein kinases family AT5G25110 62.309 0.0 588.0
Chma6g00891 . 218 278 CBL-interacting serine-threonine protein kinases family AT5G58380 50.82 6.60e-14 64.7
Chma8g05156 . 252 405 CBL-interacting serine-threonine protein kinases family AT5G35410 44.172 6.49e-25 103.0
Chma9g05850 . 2 425 CBL-interacting serine-threonine protein kinases family AT5G45820 66.222 0.0 610.0
Chma7g05065 . 119 266 CBL-interacting serine-threonine protein kinases family AT4G24400 45.946 8.91e-37 135.0
Chma7g06172 . 18 441 CBL-interacting serine-threonine protein kinases family AT4G30960 73.721 0.0 619.0
Chma3g03048 . 42 300 CBL-interacting serine-threonine protein kinases family AT5G25110 44.118 1.90e-66 216.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chma Pkinase 2.9e-74 CL0016 PK CAMK_OST1L