AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g09281 ATGTCCTCTTTCTCAGTCAAGTTTCTTGCACCAACTTCATTTCTCAACCCTAAAACAACAAACTTCAACTCCAAGAAACTCCATGCAACTCCTCCACAACAAACCACAGTTCCATCTCCAGCACCATCTCCAGTTCCAGCAACAGATATCATCATCAGTCTAGAAAGACTAGAACCTAGAGTTGAGAAAAAAGATGGATATTATATACTTAAGGAAAAGTATAGACAAGGTATTAATCCACAAGAAAAAGTTAAGATAGCTAGTGAACCAATGAAGCTATTTATGGAAAATGGTATTGAAGATCTTGCTAAGATACCTTTTGAAGACATTGATAAGTCTAAAGATACTAAAGATGATGTTGATGTTAGGCTTAAATGGCTTGGTTTGTTTCATCGTAGGAAACATCAATACGGTCGGTTTATGATGAGGTTGAAGCTCCCAAATGGCGTTACAACAAGTGCACAAACTCGATACTTAGCTAGTGTCATTAAGGAGTATGGGGAGCAAGGCTGTGCGGATGTTACCACACGCCAAAACTGGCAAATTCGTGGAGTTACATTACCTGATGTACCCGCAATCCTAAAAGGTCTTGATGAAGTCGGTTTAACTAGTCTTCAGAGTGGTATGGACAATGTTAGGAACCCTGTTGGGAACCCACTTGCAGGGATTGATCCTCATGAAATTGTGGACACAAGGGTTTACACGAATTTGTTATCGCAATTTATCACTGCTAATTCTCGGGGGAACCCTGAATTCACCAACTTGCCAAGGAAATGGAATGTTTGCGTGATTGGTTCACATGATCTTTATGAACATCCACATATCAACGATCTAGCGTATATGCCAGCTACAAAGAATGGTAAATTTGGGTTCAACTTGTTGGTGGGTGGATTCTTTAGTCCCAAAAGATGTGCAGAGGCTATTCCTCTTGACGCGTGGGTCCCAGCTGAAGATGTTGTCCCGGTTTGTGGGGCGATTCTTGAGGCTTATCGTGATCTTGGTACAAGAGGGAACAGGCAAAAGACTAGAATGATGTGGTTGATTGATGAACTCGGTGTCGAAGGGTTTCGATCTGAAGTGGTAAAGAGAATGCCCGAACAAGCATTGGAGAGGGCTTCTTCCGAAGATCTTGTTGATCCAAAATGGGAAAGAAGGGATTATTTTGGTGTGCACCCGCAAAAACAAGAAGGCCTTAGCTTTGTGGGCGTTCACATTCCTGTGGGCCGGGTCCAAGCCGATGACATGGACCAATTAGCCCGGTTAGCTGAAGAATACGGCTCAGGTGAGCTCAGGCTAACCGTGGAACAAAACATCATACTCCCAAACATACCAAACTCAAAAGTCGAAGCTTTACTTAACGAGCCTCTTCTAAAAGAGAAGTTTTTACCCCAGCCACCTATCTTGATGAAAGGGTTAGTAGCTTGCACGGGTAACCAATTTTGTGGACAAGCCATAATTGAGACAAAAGCCCGTGCTTTGAAGGTTGCAGAAGAAGTTGAGGAACTTGTTTCCGTGACCTATCCAGTGCGGATGCACTGGACTGGCTGCCCTAACACGTGTGGCCAGGTTCAAGTGGCGGATATAGGATTTATGGGATGTATGACTAGGGACAAAAATGGAAAGGTAGTAGAAGGAGCCGATGTTTACTTGGGGGGTAGAATTGGTAGTGACTCACATTTGGGGGATATCTATAAAAAGGCTGTCCCGTGTGAGGACTTGGTGCCTTTAGTTGTGGACATTATGGTCGAAAAATTTGGCGCTGTTCTGAGAGAAAGAGAAGAGAGCGAAGAGTGA 1794 43.53 MSSFSVKFLAPTSFLNPKTTNFNSKKLHATPPQQTTVPSPAPSPVPATDIIISLERLEPRVEKKDGYYILKEKYRQGINPQEKVKIASEPMKLFMENGIEDLAKIPFEDIDKSKDTKDDVDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIKEYGEQGCADVTTRQNWQIRGVTLPDVPAILKGLDEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRVYTNLLSQFITANSRGNPEFTNLPRKWNVCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSPKRCAEAIPLDAWVPAEDVVPVCGAILEAYRDLGTRGNRQKTRMMWLIDELGVEGFRSEVVKRMPEQALERASSEDLVDPKWERRDYFGVHPQKQEGLSFVGVHIPVGRVQADDMDQLARLAEEYGSGELRLTVEQNIILPNIPNSKVEALLNEPLLKEKFLPQPPILMKGLVACTGNQFCGQAIIETKARALKVAEEVEELVSVTYPVRMHWTGCPNTCGQVQVADIGFMGCMTRDKNGKVVEGADVYLGGRIGSDSHLGDIYKKAVPCEDLVPLVVDIMVEKFGAVLREREESEE 597
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g09281 597 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 5 596 IPR051329 -
Chma7g09281 597 MobiDBLite consensus disorder prediction 23 44 - -
Chma7g09281 597 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 345 481 IPR036136 GO:0016491(InterPro)
Chma7g09281 597 PRINTS Sirohaem Fe-binding site signature 470 488 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Chma7g09281 597 PRINTS Sirohaem Fe-binding site signature 514 532 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Chma7g09281 597 Gene3D - 77 458 - -
Chma7g09281 597 ProSitePatterns Nitrite and sulfite reductases iron-sulfur-siroheme-binding site. 514 530 IPR006066 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Chma7g09281 597 Pfam Nitrite and sulphite reductase 4Fe-4S domain 209 366 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Chma7g09281 597 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 133 200 IPR005117 GO:0016491(InterPro)
Chma7g09281 597 Pfam Nitrite-Sulfite reductase ferredoxin-like half domain 391 455 IPR005117 GO:0016491(InterPro)
Chma7g09281 597 Pfam Nitrite and sulphite reductase 4Fe-4S domain 472 583 IPR006067 GO:0016491(InterPro)|GO:0020037(InterPro)|GO:0051536(InterPro)
Chma7g09281 597 Gene3D Sulfite Reductase Hemoprotein, domain 1 466 596 IPR045854 -
Chma7g09281 597 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 209 366 IPR045854 -
Chma7g09281 597 SUPERFAMILY Nitrite-Sulfite reductase N-terminal domain-like 57 208 IPR036136 GO:0016491(InterPro)
Chma7g09281 597 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 470 581 IPR045854 -
Chma7g09281 597 Gene3D Sulfite Reductase Hemoprotein, domain 1 201 386 IPR045854 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g09281 K00366 ferredoxin-nitrite reductase [EC:1.7.7.1]